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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357000 |
| Transcript ID | LotjaGi6g1v0357000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G25280.1 tubby like protein 10; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|I1MDS7|I1MDS7_SOYBN Tubby-like F-box protein; Found in the gene: LotjaGi6g1v0357000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66873965..66877429) extracted from Lotus japonicus Gifu genome v1.2.
GTGATGACCAAACATCTAGTGTTTTCATTCTCTCATTTCATCTCGGTCGTCGTTATCTTGAACACCTGTTGCATTTGATT CATGACTATGGATGCTTTAATTGGAGCGTCCGAAAACATTGATTGAAATGCAGGATATGGTGTCTATTCTGGGTCATAGT AGTAACATATATAGATAGGATCTTAGTTGGATAGATGAAGAGTGATAACTAATAAGTAATAACTGAATTCCAACAATAAT ATTGAAATGAAGTGATTGTTGATCTGAAACTTCTTTTATTGCAGCCATATGCTCAGTGCAGAATGTCATTCCGCAGCATA GTTCGTGACGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGCCATCATAGAGGAAA ATCTCATGGCTCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGGCAAGCTTACCCCCAGAAT TACTATTTGATGTCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCA GTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATTGTTAAGAGCCCGGAGTTCTCTGGCAAGCTTACATTCCCTGTGTC CCTGAAGCAGGTTAGCATCATTACTTTTCTCTTAGTGTCTCATTCTTTGTTGAACAATCTGTATATAGTGGATGCAACAA AACACTTATCTTTTGCTCCTTTCACTTTTCAGCCTGGGCCACGCGATGGGATCATTCAATGTTTTATCAAAAGGGATAAA TCTAACTTAACATACCACCTGTTCCTTTGCCTAAGCCCCGGTAAGCACTCTAAATATACATGTAGTTGTCCCTTTGGTTT ATATGGTTGTGTCTGGTTGCTTCTGTTATGACCCTGTACATTTTATCTGATGTGATGTTCAATTTTTAAACACATGAACA CTTTTGCATATGTTGATTGTGGCTGCCCGCTGCCTGTGGGTAACTATTTGCATGGGTATTTGATTTCGGGCCTATATGGG ATGATATTTATGATACTGTAATTTGTGCTGCCGTAGTTTCGACTGTAGGACTGCAGTCTTGGGATGGGCTTTACAAGTTT CACCTCACATTTTCCCATCTTTTGTCCAAATCAGCAATCAAACGTTGCTATGAGCATGAAGCCGGTTAAATCCATAATGG TTGTTTGCCCTGTGTTGTATTTATTTCCCTTTATGATTGATATCAGGAGTTTAGGGTCATCTTGTTTGATAGCCATTTAG TTGGGGGCAAGTCTAACAGACTTTTTTCCGTTTTATTTGAATTCCGTTGGCTATATTCCTTGTAATTTTTTAAGGCTGTG GAGGTTTTCTATTTTATAGTCAGCTTAGTTTTTTTGTTATTATTTTGTCAGGTGGAGAAAGTTTATCAGTTGCATTTTTT GATGCTTCATTGTTTTTCCTGGTGTGTGGTGGGTTTGAAGTTTTTAGATGTTGACCAGATAAGAATCACAAATGGTCTTT GCAATGGTTAGGGGTGAAACTATGGAGTTATTTTTAGAGTTTGAAATGTTCCTTCATTCTATGAAATTAAGATTTGTCTG AGCAGTCTTGTGAAGTGTGTAATAATTTCCATCTATCATTAGTTGCTGCTTGGAACGGCTTGAATCTGTGTGTCTATGAC ATAGTAAACATAAATCTGTTCATTACCATGCGCTAATGCTTGCGGAACTCATTTCATATTTTCCTTTTCTTTTCTGTTTA CTTTGACTTTTGCAGCTCTATTAGTTGAAAATGGAAAATTTCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACC GAGTACGTTATTTCCATGGATGCTGACAACATTTCTAGATCAAGTAATACTTACATTGGAAAGCTGAGGTGAGTTTACTG GTTACAAGAGTTTCATCCTCAGTTACTCTTTGACTATATTAAAGAAACTTCTTTCCGTTTCCTACATATAAAACCTGCTA AAATACTATGATTGTTAGCTCTCGAGTTAAGCCAGCTCTGAAACATGTGTATGTTAGGAAGAGGACCAGAGCTGTGTAAT AGGAGTATCTCAGGGACTTAATTGTAAATAAGTCAGAATATACAGCTGGCAGTTAGCTATGTTAGAACAGACTATAAATA GCTAAAACTTAGAGAGGAAGAAGCATCTTTGGTAGTTAGAACTGGAACTGGTTGTGGAACCAGGAATTGATTCATTGGGA ATCAATAGCAAACCCTAGATTCGAGTTCTTCCTCAATTCCCCAAATTACTTGTACAATTGATCTCTGACTTGGAGTCTCA GTGATTCTCGGTTAGGGATTCTACTTCTGTAATCGTTTTCTACCATCAATAATACCAGTTTCATCAATGATCTAGGGTTT AGACTGTCACAATGCAGTCCCAACTCCAAACGTATAACAGCAGAATAATGATTTTTTTATGAATTTCAGTCAGGTTGCAG ATGTAAACCTTTTGAACTTGACATATTTTAGATGCACATAACTATTTAGAAATATATTGTGACAGATTTTTCAGAAAGTA GGATCATCTTCCGTTTTTTTTTTTCTCTGTTAAGGTAATAGTTTAGGTTCTTACTCCATCATCAATTTTCAATTAATTCA TTCCCATATATATTCTAGTTTGTGTTATTTATTTAGTATTTTATGTTCTATTTTTACATTGCGTCTTCACATTTATGAAA GTTTATTTTACATTGATTTGCCAGATCGAACTTTCTCGGTACAAAATTCATCATCTATGACACACAGCCTCCATACTCTT CTGCCCATATATGCCCTCCTGGGACTGGGAAGACAAGCCGCAGGTTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCT GGTAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGGACTCGAGGCCCAAGGAAAATGCACTGCATTAT GCACTCAATACCAGCCTCAGCACTTGATGCAGGCGGCACCGTTCCTGGCCAGCCAGAGCTCCTTCCTCGTTCCCTGGATG ACTCATTCCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCTATCGAGTTCAGCAGCTCACGATTTTCTGAGATCGGG GGATCCTGTAACGAGGATGATGATGGCAGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCACCGAGATGGCATGAACA GTTGCAATGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCAACCC AGCCACCAGCTGCAGGTGCACCTACACCATCTCAACCAGCTCCACCAGAGCACGACAAGATTATTCTGCAGTTTGGCAAA GTGGGGAAAGACATGTTCACCATGGATTATCGGTATCCTTTGTCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTT TGACACCAAACTAGCTTGTGAATAG
CDS sequence (LotjaGi6g1v0357000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAAACATCTAGTGTTTTCATTCTCTCATTTCATCTCGGTCGTCCCATATGCTCAGTGCAGAATGTCATTCCGCAG CATAGTTCGTGACGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGCCATCATAGAG GAAAATCTCATGGCTCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGGCAAGCTTACCCCCA GAATTACTATTTGATGTCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGC TGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATTGTTAAGAGCCCGGAGTTCTCTGGCAAGCTTACATTCCCTG TGTCCCTGAAGCAGCCTGGGCCACGCGATGGGATCATTCAATGTTTTATCAAAAGGGATAAATCTAACTTAACATACCAC CTGTTCCTTTGCCTAAGCCCCGCTCTATTAGTTGAAAATGGAAAATTTCTCCTTTCTGCTAAGAGGACAAGGAGAACAAC TTACACCGAGTACGTTATTTCCATGGATGCTGACAACATTTCTAGATCAAGTAATACTTACATTGGAAAGCTGAGATCGA ACTTTCTCGGTACAAAATTCATCATCTATGACACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGG AAGACAAGCCGCAGGTTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGTAGTTACAACATAGCTCAGGTAACATA TGAATTAAACGTGCTTGGGACTCGAGGCCCAAGGAAAATGCACTGCATTATGCACTCAATACCAGCCTCAGCACTTGATG CAGGCGGCACCGTTCCTGGCCAGCCAGAGCTCCTTCCTCGTTCCCTGGATGACTCATTCCGGAGCATCTCATTTTCAAAG TCTCTAGATCATTCTATCGAGTTCAGCAGCTCACGATTTTCTGAGATCGGGGGATCCTGTAACGAGGATGATGATGGCAG CAAGATGAGACCCTTGGTTCTGAAAAACAAGCCACCGAGATGGCATGAACAGTTGCAATGTTGGTGCCTTAATTTCCGGG GACGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCAACCCAGCCACCAGCTGCAGGTGCACCTACACCA TCTCAACCAGCTCCACCAGAGCACGACAAGATTATTCTGCAGTTTGGCAAAGTGGGGAAAGACATGTTCACCATGGATTA TCGGTATCCTTTGTCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAACTAGCTTGTGAATAG
Protein sequence (LotjaGi6g1v0357000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKHLVFSFSHFISVVPYAQCRMSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSCWASLPP ELLFDVIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYH LFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTG KTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLDDSFRSISFSK SLDHSIEFSSSRFSEIGGSCNEDDDGSKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTP SQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 451 | 430 | - | – | |
| PANTHER | 23 | 451 | 429 | 1.3E-272 | – | |
| PANTHER | 23 | 451 | 429 | 1.3E-272 | – | |
| SUPERFAMILY | 71 | 119 | 49 | 3.27E-6 | ||
| Pfam | 74 | 126 | 53 | 1.9E-9 | ||
| Gene3D | 75 | 120 | 46 | 2.0E-5 | – | |
| SUPERFAMILY | 124 | 451 | 328 | 3.14E-103 | ||
| Pfam | 138 | 446 | 309 | 2.0E-100 | ||
| PRINTS | 191 | 207 | 17 | 5.3E-80 | ||
| PRINTS | 207 | 231 | 25 | 5.3E-80 | ||
| PRINTS | 259 | 286 | 28 | 5.3E-80 | ||
| PRINTS | 354 | 371 | 18 | 5.3E-80 | ||
| PRINTS | 372 | 388 | 17 | 5.3E-80 | ||
| ProSitePatterns | 372 | 385 | 14 | - | ||
| PRINTS | 408 | 427 | 20 | 5.3E-80 | ||
| PRINTS | 429 | 451 | 23 | 5.3E-80 | ||
| ProSitePatterns | 436 | 451 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0357000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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