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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357700 |
| Transcript ID | LotjaGi6g1v0357700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kinetochore NDC80-like protein; TAIR: AT3G54630.1 kinetochore protein; Swiss-Prot: sp|O14777|NDC80_HUMAN Kinetochore protein NDC80 homolog; TrEMBL-Plants: tr|I1MDQ7|I1MDQ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0357700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66955023..66958872) extracted from Lotus japonicus Gifu genome v1.2.
CGGGAATTCGAAACACTGAAATAAAACTCCGAAACCGAAAGTAAACTGAAAAAGAAATTCAAAATTCAAAATTGAAAATT GAAGCAGCGAAGATGAGACCTAGCGGCCCCGTTCGCCGGCAACCGAAGGACTCCTTCATCCCTCCACCGCCGACACCCTC CTACCGCCCCCGCGACTCCGATGCCAGCAGCCGCCCCTCCTCCGTCGGCATCGGCGCCCGTCCCACTCTCGACCTCTACA AGGAGCGCTCGTTCCAACAATCAGCGGTTTCCACCATCAACTCGTTCCTCGCTTCCCATAACTTCCCCATCACGTTCAAA CCTGCATCATCTCCTTCCTCCAAAGACATCCATGAAACCCTCAAGTTCCTCCTCTCTCTCCTCCTCGATTCCCCTTTCAA ACTCGAAGACGATCTTCCCTTCCTCCTCAAGCGTCTCAATTACCCTTTCAAACTCAACAAATCGATCCTCAAATCTCCGG CAGCGCCGCACCAGTGGCCAACGTTCCTCGCTCTCCTCCACTGGCTTGTCCAGATCTGCAAATCTCTCCACCATAACCTC TCGATTTCTTCCCCTTCACCTCTCCATAATAACCTCCTCTTGACCTACACGCTCAACAGCTACCTCCACTTCATCCGCGG CGATGACGACGCTGTTGACAATCTCGACCAGCAAATCCGCGAGAAGATCCTCCATGAGAAGGCCCTTGCTCAGGAGAAAC TCAAGTCCACCATGGACGCTGCTGCTGCCTTGGAGGCGGAACTGGAGAGGCTCAGGAACGCGCCTTCGCAGCGGGAGTTG CTTGAGAAGGAGAAGGCTATGCTGGAGGATGATGTGAAGAAGTTCCACAAGATTATTGAGGAGTTTTCGTTGAAGATTGA GGCTATGGAGAAGGTGTTGGCGGAGAAGGAGAAGCAGCTTGAGGCTAAGGTTGGGGAGAATGCGATGATTTGCGAGGAGA ATGGGGAGCTGAAGAGGAGGGTGGAAATGCAAACGTTTAATGTCAGAGATGTGGAGCGGATGAGGAAGGAGTTGCAGGCT GTGGAGAGGGATATCGGGGAGGCTGAGCTTGCTAGGAATACATGGGAGGAAAAGTGTTGGGAAACTGACGCTGAGCTCGG CCACAAGGTCAAGGACCTGGAGGCACTCGCAATGGATGGTAACCAGGGCCTTAGAAGGTTAGTGTCTTCTTACTCACCTC TCACTGCCACTTAGTTATTTGTTGTAGTATCCGTTTGTTTTTGTAATTTATAGTATATAAACATCATTACCAATTGAATG TGCTCTGAGCCTTTGATAACACATGTTCATTGTTCACTGTTATGTCTATTAGCTACTGGTCTCCCATGAATTATTTCTGA TATTGAATGTTTTCTAGTTCTACTAATGTAGAATGGAATGAAATGAAATGAGATGGAATGGAATGGGTTAGGTAGAATGG AATGGAATAATAGTGTTGTTTCAATGGAAATTGTAATAATGGGATAAGATATTGGGTAGAAAGTGATGCATTCCATTCTA TTTCATATCATCTTAAGCAATTCAAACAATCAATGGAACATTTAAGTATGTGATAAAAAAATATTTGTTCCATTTCATTT CACCTGAATTCTAGGGGAAGAGAGAGTAATTTATTAGATGGAGTGAAGGATGGAATTTATTCCGTCATGTTCCATTCTGC TTCATCTGATGTTAGATAGTTCAAACAAAAGAACAGTTAATGATTGATTTCACTCCATTTGATCACTTTCAGACTTCAGT CAATCCAAACATAGATAATGGTATAGCCTTGAATCAATTCTGACATTGGTTTTCTGTCTCTGTCACAAACATGCTCTTTT TTGTGCTGATTCTAGGCTGAAGATCGGCAATGGTGTTCAATATCAGTTGAATCCCAAGGGAACTACGCCTGCTGAGATAA TGGGCATTGATTACAAAGTCACACTGAAGCCTGCACTTAACTCCTTTGCTGATGAGATCAAGAAAAATTCTATGGGGAAA TTGGAAGAGTCAATTTCCCTTCGGCAGAAGTCGAACGAAAATGCTGCTAGGCTTGAGGGGAAAAGAAATCAGCTTGCAGC AATGCAGTCATACATTGATGAAGTAAGTGCTTTGCATCATGTTTAGCACTAATCTTAAGACTTAGTTTTCACTATGTTTA CTTTGCAGATACAAGTTGTTCTGTTGTATAACTTGAATATTTAGATGGGAAATCTGAATTGTATTGATGACCAATCAAGT TGATACACACCTCTACTTCCTTTTTTTCTGGCAATATTTTTGAAACACTCTTTTGTAGAGTTAGATGGGTTTAAGAAACA AGAGTCATCTTGCCTTGTGAAGTGTGAAGACTTGTTTGACTTTATTTTCTACTGCTTGTCATTATCTGCCAGATGGAAGC TCAAATGAACATCATGAAGAAGGAAACACAGGACTACACAGGTAGATGTTCTGCTGAAGCTCAGAAAATGTTGGAGGATG TCCAGCTAGCAGATCATGACTTGGACAATATGGAAAGGGAGGTAGCTGAGGTTTTAAAGGTAAATTCTGGGTTATTTTTT TCTTCAATAATCAATTGAGTTTGAAATGCTAAGAGTTCTTCAAGAGATTGAACATTTGTCTGTCATTATATCTTTGTTTC AATAACTGTGGAGTGGCAAGCAAAGTTCGCTGTAAACTCCTCATTGATCAGCCTATTTCTTACTAGTAATGTTTTTGAGT TAATTCTTATTTATCTTGATGCTACCCATTAGTATGTAATCTTTTTTGGGGGGATCAGACTACATGCAGTGCACAAATGA GTGCTAGTTTGCGAGCACCGAAGAGCATAAGTATTTGTTATATCCTTTGTTATGTTTTGCCTAGTCCTTTTCAGCATAAG TATATTTTGCTGCTTCTTATGTTTTGCTTAGTTTTTGTTCTAGCCCTTTGTTATGTTTTGCCTAGTCCTTTTCAGCATAA GCTTTGGCATACCTGGATCCAAACAGCCAACAGGGAGTATGTAGTGTATGTACTATGTAGCTATATATTTGTAGTGTGTG TGTGTGTAGAGAGGGAGAATGAACTGATTCAAGGGATATCAAGCTTGGTAACAGGGCTAATTCAATGTGAAATGTATACA TGCCGGTCTTTTATCTGCCGAATCAGTATAATTATGTAATAAACGCATTTGGAAAGAAGATATATGTGAGCTTTTCCAAT CTTCATTAACATGGCTGCTAGCTTTTGGTTAAAATTAGCCTGATTCATGTGATGAAATTTTATCTAATGAACTTCATTAT TTTTGTCAAGGCCTCTGAGTTGAAGTTGCAAGAAGCAACCAAACAAAGTGAAGAAGAAATTCAAGTGCATGCTCGCAAAC TCTTTAAGTTGGTTGATTCAGTCTCGCAATACAAAGAACATGTGGGTACTAAAGTTTCAGAGATGAAGAGGGACCTATCT GAAACTGCAAATGCTGTCTCAGAAACATACCAAGGTTCATTCTCAGCTGAATTTGGTAGAGTATTCAATGCAACCCGCCA ACTTGAGTAAAAAAATTAGGTGAAACATAGTGTGTGTGTGTATATACCTTCTCCATGGCACTTTTTTCTTTTCTGCACAC TGCAACTGTTGCTTCATTTAGTTTTCCGTTTTTATTATTAATTGCTGGTTATGTGAACCATTTGATCAATGAAGCTCTAC TTTGATGACAAGTGATGTATTTCTCCAAACAATGTTACGCCCGCACACTTATACGTGCATTAACTCAAGGAAGATATAAA GCTTATCACTTTCCTGCAAAACAAAAAGGTATAAGGCGGAACTAGGATATAAAAATTGAGGGTGCCAAAATTATAAGATT TCAATTCAGC
CDS sequence (LotjaGi6g1v0357700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACCTAGCGGCCCCGTTCGCCGGCAACCGAAGGACTCCTTCATCCCTCCACCGCCGACACCCTCCTACCGCCCCCG CGACTCCGATGCCAGCAGCCGCCCCTCCTCCGTCGGCATCGGCGCCCGTCCCACTCTCGACCTCTACAAGGAGCGCTCGT TCCAACAATCAGCGGTTTCCACCATCAACTCGTTCCTCGCTTCCCATAACTTCCCCATCACGTTCAAACCTGCATCATCT CCTTCCTCCAAAGACATCCATGAAACCCTCAAGTTCCTCCTCTCTCTCCTCCTCGATTCCCCTTTCAAACTCGAAGACGA TCTTCCCTTCCTCCTCAAGCGTCTCAATTACCCTTTCAAACTCAACAAATCGATCCTCAAATCTCCGGCAGCGCCGCACC AGTGGCCAACGTTCCTCGCTCTCCTCCACTGGCTTGTCCAGATCTGCAAATCTCTCCACCATAACCTCTCGATTTCTTCC CCTTCACCTCTCCATAATAACCTCCTCTTGACCTACACGCTCAACAGCTACCTCCACTTCATCCGCGGCGATGACGACGC TGTTGACAATCTCGACCAGCAAATCCGCGAGAAGATCCTCCATGAGAAGGCCCTTGCTCAGGAGAAACTCAAGTCCACCA TGGACGCTGCTGCTGCCTTGGAGGCGGAACTGGAGAGGCTCAGGAACGCGCCTTCGCAGCGGGAGTTGCTTGAGAAGGAG AAGGCTATGCTGGAGGATGATGTGAAGAAGTTCCACAAGATTATTGAGGAGTTTTCGTTGAAGATTGAGGCTATGGAGAA GGTGTTGGCGGAGAAGGAGAAGCAGCTTGAGGCTAAGGTTGGGGAGAATGCGATGATTTGCGAGGAGAATGGGGAGCTGA AGAGGAGGGTGGAAATGCAAACGTTTAATGTCAGAGATGTGGAGCGGATGAGGAAGGAGTTGCAGGCTGTGGAGAGGGAT ATCGGGGAGGCTGAGCTTGCTAGGAATACATGGGAGGAAAAGTGTTGGGAAACTGACGCTGAGCTCGGCCACAAGGTCAA GGACCTGGAGGCACTCGCAATGGATGGTAACCAGGGCCTTAGAAGGCTGAAGATCGGCAATGGTGTTCAATATCAGTTGA ATCCCAAGGGAACTACGCCTGCTGAGATAATGGGCATTGATTACAAAGTCACACTGAAGCCTGCACTTAACTCCTTTGCT GATGAGATCAAGAAAAATTCTATGGGGAAATTGGAAGAGTCAATTTCCCTTCGGCAGAAGTCGAACGAAAATGCTGCTAG GCTTGAGGGGAAAAGAAATCAGCTTGCAGCAATGCAGTCATACATTGATGAAATGGAAGCTCAAATGAACATCATGAAGA AGGAAACACAGGACTACACAGGTAGATGTTCTGCTGAAGCTCAGAAAATGTTGGAGGATGTCCAGCTAGCAGATCATGAC TTGGACAATATGGAAAGGGAGGTAGCTGAGGTTTTAAAGGCCTCTGAGTTGAAGTTGCAAGAAGCAACCAAACAAAGTGA AGAAGAAATTCAAGTGCATGCTCGCAAACTCTTTAAGTTGGTTGATTCAGTCTCGCAATACAAAGAACATGTGGGTACTA AAGTTTCAGAGATGAAGAGGGACCTATCTGAAACTGCAAATGCTGTCTCAGAAACATACCAAGGTTCATTCTCAGCTGAA TTTGGTAGAGTATTCAATGCAACCCGCCAACTTGAGTAA
Protein sequence (LotjaGi6g1v0357700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPSGPVRRQPKDSFIPPPPTPSYRPRDSDASSRPSSVGIGARPTLDLYKERSFQQSAVSTINSFLASHNFPITFKPASS PSSKDIHETLKFLLSLLLDSPFKLEDDLPFLLKRLNYPFKLNKSILKSPAAPHQWPTFLALLHWLVQICKSLHHNLSISS PSPLHNNLLLTYTLNSYLHFIRGDDDAVDNLDQQIREKILHEKALAQEKLKSTMDAAAALEAELERLRNAPSQRELLEKE KAMLEDDVKKFHKIIEEFSLKIEAMEKVLAEKEKQLEAKVGENAMICEENGELKRRVEMQTFNVRDVERMRKELQAVERD IGEAELARNTWEEKCWETDAELGHKVKDLEALAMDGNQGLRRLKIGNGVQYQLNPKGTTPAEIMGIDYKVTLKPALNSFA DEIKKNSMGKLEESISLRQKSNENAARLEGKRNQLAAMQSYIDEMEAQMNIMKKETQDYTGRCSAEAQKMLEDVQLADHD LDNMEREVAEVLKASELKLQEATKQSEEEIQVHARKLFKLVDSVSQYKEHVGTKVSEMKRDLSETANAVSETYQGSFSAE FGRVFNATRQLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 6 | 562 | 557 | 3.9E-242 | – | |
| PANTHER | 6 | 562 | 557 | 3.9E-242 | – | |
| Gene3D | 47 | 152 | 106 | 1.5E-25 | ||
| Pfam | 50 | 156 | 107 | 1.9E-27 | ||
| Coils | 203 | 230 | 28 | - | – | |
| Coils | 255 | 282 | 28 | - | – | |
| Coils | 307 | 334 | 28 | - | – | |
| Coils | 418 | 462 | 45 | - | – | |
| Coils | 467 | 501 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Ndc80 complex | A protein complex conserved among eukaryotes that forms part of the kinetochore and plays an essential role in forming stable kinetochore-microtubule attachments. The complex contains proteins known in several species, including budding and fission yeasts, as Ndc80p, Nuf2p, Spc24p, and Spc25p. In vertebrates it is part of the outer plate of the kinetochore. | ||
| Biological process | Attachment of mitotic spindle microtubules to kinetochore | The cell cycle process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex as part of mitotic metaphase plate congression. |
Expression pattern of LotjaGi6g1v0357700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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