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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0358000 |
Transcript ID | LotjaGi6g1v0358000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60S acidic ribosomal protein P0; TAIR: AT1G25260.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog; TrEMBL-Plants: tr|I3S103|I3S103_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0358000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67000738..67003926) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACCTAAATATACAAACACGAGCCTCTTGTCTTCTCTAAAACCCTACAAACACACGAGCTGCAACTCAATCGCAACA GAGAAAGCAAGAGAAGAGAAACTCACAAAGCAGCCTCAAAATGCCAAAATCGAAACGGAATAAACAAGGTTTGTGTGTTT CAATTCTCTGAACATGAATCGCTAACCAATTTTGATTTGTAGCACAGAAAAAACTAAGAGAATGATGTTTTTGTTGTTGT TGCAGTTACACTATCGAAGACGAAGAAGAAGGGAAGAGAACACAAAGAGGTAATAGTGAACGCGATTAGAGATGCAGCTG AAAAGTACAGTTCGTTGTACGTGTTCTCCTTCGAGAACATGAGGAATCTCAAATTCAAGGAGTTCAGGGACCAATTGAAA TCGAGTAGCAGATTCTTCCTTGGTTCCAACAAAGTCATGCAGGTCGCTCTTGGTCGTTCTGCTTCTGATGAGATCAAACC TCGCCTGTATAAGGTTTCAAAGGTTGTTACATGTTACCTACCCAACAAATTGTTTTTTGTTTTAATTAATTTTTTACTTA TGATATTCTGTTGGTTTTTTCTCTTTTAGTTGCTTCGCGGAGATTCTGGCATGTTTTTTACCAATTTGTCTAAAGAAGAA GTTGAAAGGTAATCTTTGCAAAACTAGTATTTTGTAGTTTTATTGGTGATTTTTGGTTATGCAGTGCTATTCCTTTGCAG TTTAAATGGACTTGAAATTTAGTTATGCTCAGGAATGAGCAAATTTATTATTCAATTGTGCAGCATCTATGTCTTTGTGT TGTGTTATGTGTCTATATCATTGTCTTATTCTTATAGACTATGTGATATGATATATGATATTCAATTGTTGTGCTTAACT CAGTAGTTTATTAACATTAATGATATATGTCATTCTAGATGTCCCATTTTCTTCCTCTGACTCCAACTTGATCTTGTTGA TGCCATTTGCAGGCTGTTCAATGGATATGAGGAATATGACTTTGCAAGAACAGGAGGCATTGCCACCGAAAAGGTGTTTA ATCTAATTCATTTTTAAGTTTTTCTTCCATACAAAGGCCCTGTTGACAGAAACCATACATACATATGGCATGAATTTGAA ATCTGTGTATAAAACTCAAACTTCCACTATATGAATGTTTCAGGTGGATCTCCAAGAGGGTCCTTTAGAGCAGTTTACAC ATGAGATGGAACCTTTTCTCAGGAAGCAAGGGATGCCTGTTCGGTTAAATAAAGGTACATTTTGTGATTATGGTTTAAAT TGACCTGCCACCATTGAACATGTATAATTGATGTTGTCAAAATTTACAGGTGTTGTGGAGCTTGTTTCTGATTTTGTTGT TTGTGAAGAGGGAAAGCCCTTGTCACCTGAGGCATCTCGCATACTGGTTAGTTTTTTTTATTACTTAAATGTTTGAAACC CTGAAGTCATGCCACTTTGAGGAAGACTTTACTCGATCACCATTATTTTTCACAGCTATGTCTGAAAAAAAAAACACACA CATGGAGTGTGAATGATAGAAAGCTCTTATATTATTCATTTTTCCCCTTCCTTCTTTAACTTTTATGTAGTGAGTGATAC CATTGATTTTTTTTTCCTAGAGAGTTTAAAGTGCATCACATTGTTGCTTTTGGTTTTGTTTCTCTTTAAATTTGCAATAT TCTTTTCCAACTCTCTGGCCTTAGTCAATTATAACGTGGGTTAGTGATAAGTATGCCTGTCATCTTCACTTATCTCATAC CATCATATGTCGATGTAACAACCTACCAGTACAGGTTCAAAGTGTTCGTAATTGACACTAATTATTGTACTGTGATATTA ATTTTCTAAAGAGGCTGACACGGACTGTTCTTTGCAGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTCACCTGG TTTGCAGGTGGACTCCCGATGATTTTGAACTTTACATTGATGGACCTGGTGATTCAGATGTTGAATGCTCATAGTAACCC TGTTTTGAAACGATGAAGATTACAAGATTCGATGCGGATGTAATTTTTTGCGTAGGAGGCAGCCTTGGTTTGCTCATAGA ATGCTATGTAGTGTCTGGCTATTTTCTGATAATGTATTTTTAGTGGATTTTATGAATGTGAGTCTTTCGTGTACTAGGGC AAGTGATCAACTGGGAAGTGGCATGTAGCCTGTCTGTAACTTATGAAAAATTCAAATTGTTATGATTACATTTTTAATTT GTTTAGCTATTTTTTTTGCTGCTGATATTCGCATCAAATTAATAACCTTCATGCTCCTGGAACTTTCTTTCAATTTCATT CTGAAAAAAATAATGTCTTCGTTAGTTGTGAATTTAGCCAATTTTGTTAGCCTATATTGAAATTGCTGGTATTGGTTTGA GAAGCTGATAGAGTCCAGGGTCTCCAACAATCTGGCAATGTGCCCATGATTGCTGATGGGCCAGTAGGGCCCAAGGCTTG GAAAGTTTATTCTAGAAGAGTCAAGGGTGGCATGACTCATAGTTAGTTAGCCAAGGGGTGACGTGGGGGAAAGAGAGTAT CATTCATGTAATCAAAAGGAGTGTGAGGAAAGAGAGGGGGGTATTCTGTTAGAATCATATTGTTAGAGAGCAGATTGCAT TGTGCTGCAAATCTGTAGGAGCCTAGCTCTTGTCAGTGAAGAGGAATCCCCTTTCCTCTCCTCTGTAATTCTTCATTCCA TATTACTAATTAATACAAGTTCTCCCCTCTTAATTCCTTGCTGTGGTTATTTCTCTGAGTTTATCATTTGGTTCCTAACA ATTTGGTCCGACCTGCCGGATACCAAATCGAGGAAGGGCCAGTGAATGCCACCCAGGAAACAGAACAAAGGAGCGAACAA AGAGATGGAGGCGAAAATCGCGACGCTGGAAGCAGAGCTTTATGGAGTCAAGTCGTCTTTGACGTCGATGGAGCGTAACC AGGAGACGCTCATCGCGATGCTGGAGAAATCCATGGGCAAGGCAAGGCTCGATGGAGATTCCTCTGGCGACAACGCAACC CCTGAGAAGGAAACGGATCTGAGATCAGGATCGGGAAAGGGAAGCATGGTCCGACTCACCGGAGACGTGCTTTCTGAGTT TCGACAATCAGCAAAGAAGGTGGAACTTCCTATGTTTGATGGCGATGATCCTGCGGGGTGGATTTCGAG
CDS sequence (LotjaGi6g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAAATCGAAACGGAATAAACAAGTTACACTATCGAAGACGAAGAAGAAGGGAAGAGAACACAAAGAGGTAATAGT GAACGCGATTAGAGATGCAGCTGAAAAGTACAGTTCGTTGTACGTGTTCTCCTTCGAGAACATGAGGAATCTCAAATTCA AGGAGTTCAGGGACCAATTGAAATCGAGTAGCAGATTCTTCCTTGGTTCCAACAAAGTCATGCAGGTCGCTCTTGGTCGT TCTGCTTCTGATGAGATCAAACCTCGCCTGTATAAGGTTTCAAAGTTGCTTCGCGGAGATTCTGGCATGTTTTTTACCAA TTTGTCTAAAGAAGAAGTTGAAAGGCTGTTCAATGGATATGAGGAATATGACTTTGCAAGAACAGGAGGCATTGCCACCG AAAAGGTGGATCTCCAAGAGGGTCCTTTAGAGCAGTTTACACATGAGATGGAACCTTTTCTCAGGAAGCAAGGGATGCCT GTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGATTTTGTTGTTTGTGAAGAGGGAAAGCCCTTGTCACCTGAGGC ATCTCGCATACTGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTCACCTGGTTTGCAGGTGGACTCCCGATGATT TTGAACTTTACATTGATGGACCTGGTGATTCAGATGTTGAATGCTCATAG
Protein sequence (LotjaGi6g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKSKRNKQVTLSKTKKKGREHKEVIVNAIRDAAEKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGR SASDEIKPRLYKVSKLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLRKQGMP VRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRWTPDDFELYIDGPGDSDVECS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 226 | 226 | 2.9E-106 | – | |
PANTHER | 1 | 226 | 226 | 2.9E-106 | – | |
Pfam | 19 | 120 | 102 | 1.8E-18 | ||
SUPERFAMILY | 20 | 144 | 125 | 9.81E-13 | ||
CDD | 21 | 184 | 164 | 1.30101E-85 | ||
Gene3D | 30 | 210 | 181 | 3.6E-69 | ||
Gene3D | 125 | 203 | 79 | 3.6E-69 | ||
Pfam | 126 | 196 | 71 | 2.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Ribosomal large subunit assembly | The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. | ||
Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi6g1v0358000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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