Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0358500 |
| Transcript ID | LotjaGi6g1v0358500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Patatin; TAIR: AT1G33270.1 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein; Swiss-Prot: sp|Q8BJ56|PLPL2_MOUSE Patatin-like phospholipase domain-containing protein 2; TrEMBL-Plants: tr|A0A0L9VG75|A0A0L9VG75_PHAAN Patatin; Found in the gene: LotjaGi6g1v0358500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67043736..67047664) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTTTTCCAAAAAAGAAACTAAATCAAAGTGAAACTGAAATTATATTTTAGCCTAGTTCCAATCCAACCTAACCATT GGACAAACACCCTTTAAAAGGAAAAAGTTGTCTACTTCTTCTTCTCTATGATCTATCGTGAAAATCGAAATAAGTCAAAT AACAAAAAGCCAGAGAAAAAGGTTAAAAGCAATGGGATTGGAAGGAACTCAAACTTAACTACCAATAACAATACACAACC AGGAGTGTCCTCTCCTCCATTGGGCATGGCTCCCACCATTTCCTCACCGTACCATGCCCACACTTTCCGATTCCCTTCTC TCAATTCCACTCTTCTCCTCCGTTCTACCACGCGCCGCCGCACCCAATTCCTCACCTTCGCTTCCTCCTCTTCTTCTTCG CCCAACAACACTCCCCCACCTCCACTCCTCCCCACTCCTCCGCCTGAGAAGAAATCCTTCGCCATCGCCACCGGCGAGCT CTTCCTCGCCCTCGCCTCGCGCCTTATCAAAAGCCGCAGCGGCGTTGGCGACGATTCCGCTTCCGTGGCCATGTTCGAGA ATTCAGCAGCACTGAAGAAACGTGAATTGTACGAGGAGGAGAGGATTGGGGCTGTGGTGGAGGATGAGATTCAACCCGAC GTCGTTTGGGAGCAGAGGGTCAAGGACGTTGAGGCCGAGCGCAGTAGGCGAGTCGTCACCTCCCCTGGCTTTAGCTTCTC TGCTGCTGGTCTTCTCTTCCCTTACCATCTCGGAGTTGCTCAGTTTCTCATTCAGAATCATTACATCAAGGTCAGTGAAT CAATGTCTCCATATGTAGAGCTACAATATCTATAAGCACTTATGAGAATAAAATAGCTTATTACATATCTGTATATCTAT AAGCTGTTTTGAGTTTATTTTCATCGGTTGCTCAGATTGGCTTATAAATAAGCACTTATATTATACTGACTTATAAGCTA TTTTGGGCTTATTCCAATAAGCTTTTCAAAGCAACTTAGGAATAAGCACTTACTTATGTGTTTTAGATGCTTAATTAAGT TGTTTAGTCATAGACTTGGTTTCTATTGGATGTTGATTGTTGAATTGTGATAGTTCAAGTTAGAAAATTTGTTCATGGGA AGTGCAATTTGAAATAGGAGTGGAGTTGGTGATGTATGTTTATCTTCCTATCTTCGTCAAATTGGATACTTGTGAATTCT TAGTTTAGAGTTTTTATGATGCTCGTGCAGGATACCACACCCTTAGCCGGTTCCTCTGCTGGGGCCATAGTCTGTGCTGT GATTGCTTCCGGAGCAAGTATGGAAGAAGCATTGAAGGCTACTAAAATATTGGCTGAAGATTGCCGGAACCGGGGGACTG CATTTCGGCTGGGGGTATACCTCTATTCTGAAAGTACTTTCTATGTAGTTGGTCTTGACCACAGTTTTAGTAATTAGTAT GTCTCATTTGATTGCAAATGAGAGCCTGCGTGAATTCGTATCCATGACGGAAAGCTGAGAGACTTTCTTCTATTGTAATA GTGTGCTCTTGGGTTTTTTCTTTGGTTCAAATTTCATCTTTTTGGTACTATTTTTCTGCACAGGCTGTTCTGCGTGATGT TCTTGACAAGTTTTTGCCAGATGATGCTCATATAAGATCAAATGGGAGAGTTCGAGGTAATACTGCCCTGCACTATTTTC ATTATGGAAATGTCTTGCGCTAAGAGTAAAACTGGAAACTTATATCTCTAGGATCGGAAGTAACACATACTTAACAGAGA AAATATGGGGTGTAGCTGTATACCACAGTTTATATGTATTATTTTAGTTACTAAATTGCATCTATGACTTCATAGTATAG TTTTTGAACCAATTAGAAGATAAGGATTCTCTTACCGAAGTTTTGGGCCAAAAATTTAGTTTTGAAAACTGCCTAAGTTC TCTTTATTAGTAGTTGAGATTTCTGAATCCTGCTTTGTCTTGAGAGATGTACTTTCTGTCGCAGTTGCTGTGACACAGCT TCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAACGCAGTTTTTACTTCTTCCT TTATCCCAGGGTGATTTGTTAGTACACTATATTACCTTGTTATAAATGGATGAGTAAATTTAAAACTTATACTCACTGCA GATATCTTGCACCAAGGCCAGCAACAATGTTTCGAAATCGACTATGCATTGATGGGGGTTTGACGTTGTTTATGCCACCA ACATCTGCAGCACAAACCGTAAGTTTATTAAAATATTTACTAGTTGGACTATTATTTCAATTGATTGATTCTTCGCTGAA ACCGCTGTTTAAATGCATTTGGAAGCCTTATAAGATATTTTTTGTTTTGTACATTCTATTATTTTACTCGTATGTGGTAT CTATTATCTAAGAAGGGAACATCTGAGGCATCCTGGCCAAATTCAGAAACTTCTAGTTTTCAAGGAAAAGATCATTGCAT GCACTACTCACTTGTTCACTTGTTGTGAGGTGTCACTTGGAGGGTTGGGTGCCTCTACAAAGATTGAGATGGTTATTTAG TAATTTTCCCAAAATCTACCTATGATTGATTAAAGAATAATTTTCAGGGTTGATAATGTTATTTTAGGCTATCCATTTCT TAAGGTACTTTTCAGTGTGAAAGTGAAGTGGCATATTCCTCTCTCTATTATCTATTCTGAATGAGCTTAAACAAATTGAA ACTCCATGATCTGTATTCAACAGCTAGTTTGAGCCTTGAGGTATTAAGATAAATAGATGGCTAAGAAAATAATTCTGACT TTCTTGGAACATCTGAGAAGTGATGAAGGGTAGTCTTGTATTTGTGAAAGAAATCTATAAAGCAACAGGAAGCTCGTGTG TTCTGGATAAGAGAACTTTAGTAGAACTTGGCAGGTCATAGTGTCTGCACTGCATTTAGGTTTGTTTTGTTTCAGTTTTG ATGTGATGAAAGAGATTTATGATTTTTTTAAGTTCATTGTCATGTTTCAATATGTATAAGCATTTACCACTTCACAGGTT CGTGTTTGTGCTTTCCCAGCAAGTCGTTTGGGATTACAAGGGATAGGGATCAGTCCAGACTGCAATCCAGAAAACGCTTG TAGCCCCCGACAGGTATTCCTGAATTTTATGAATTAACATGATAAGTATCTTGAGGATACGTAGATGATGAGCATTCTGT ATGGAATCATTTCAGCTTTTTAACTGGGCACTTGAGCCAGCAGAAGATGCAGTTCTTGACCGACTCTTTGAGCTTGGGTA TCTAGATGCAGCTGTGTGGGCAAAGGAAAACCCAGTGGAAGAAATAGTTCAAGATGATAGTCCTGTCCTTGGAAATAGCA TTCCAGGATAGCTCATTATGTAGATTGAAGACACGTGAGGAAACTACAAATTATTGAATTCAGCCATGTTACTTGAACTT GAGCATCATATTAGCAAAAAAAATATATACCATTGGTACTGGTCAGAGGTTCATAACTGCTATTTTTTCATATTTGTTGT ATATTGCGATATAATTCTTAACCCTGGTAGAGAAGAGTAGAAAGGGAAAGCATATAGGCAATTTATTCATAAGTTATATA AGTCAGAATGGTCATGTAGTTTGAAATCCCTGATTCTTTCTTTTATTTACAAAGAGAATTTATAGCTAGTTTCTCAATGA ATGACAAATTTGTGTCACTTGAGTTTGCTCTAAACTTATGTCCTGTGATATTCAGAAACTAATTGATGTTTCTTTAATTC TTGATTAGTGTTGAACTAGGAGAAAATGGTAAATTGTGATCTTAGGGAACTTTGAGGGTATGATTTATTGCTCTTGAATT GAATGAAGATGAATGACATGGAAGAGGAAAGCCGGTAATTCATATAAATGTAAATGGCTTAAACTCCGATAGAAGCTAAT TATTCTATA
CDS sequence (LotjaGi6g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTATCGTGAAAATCGAAATAAGTCAAATAACAAAAAGCCAGAGAAAAAGGTTAAAAGCAATGGGATTGGAAGGAA CTCAAACTTAACTACCAATAACAATACACAACCAGGAGTGTCCTCTCCTCCATTGGGCATGGCTCCCACCATTTCCTCAC CGTACCATGCCCACACTTTCCGATTCCCTTCTCTCAATTCCACTCTTCTCCTCCGTTCTACCACGCGCCGCCGCACCCAA TTCCTCACCTTCGCTTCCTCCTCTTCTTCTTCGCCCAACAACACTCCCCCACCTCCACTCCTCCCCACTCCTCCGCCTGA GAAGAAATCCTTCGCCATCGCCACCGGCGAGCTCTTCCTCGCCCTCGCCTCGCGCCTTATCAAAAGCCGCAGCGGCGTTG GCGACGATTCCGCTTCCGTGGCCATGTTCGAGAATTCAGCAGCACTGAAGAAACGTGAATTGTACGAGGAGGAGAGGATT GGGGCTGTGGTGGAGGATGAGATTCAACCCGACGTCGTTTGGGAGCAGAGGGTCAAGGACGTTGAGGCCGAGCGCAGTAG GCGAGTCGTCACCTCCCCTGGCTTTAGCTTCTCTGCTGCTGGTCTTCTCTTCCCTTACCATCTCGGAGTTGCTCAGTTTC TCATTCAGAATCATTACATCAAGGATACCACACCCTTAGCCGGTTCCTCTGCTGGGGCCATAGTCTGTGCTGTGATTGCT TCCGGAGCAAGTATGGAAGAAGCATTGAAGGCTACTAAAATATTGGCTGAAGATTGCCGGAACCGGGGGACTGCATTTCG GCTGGGGGCTGTTCTGCGTGATGTTCTTGACAAGTTTTTGCCAGATGATGCTCATATAAGATCAAATGGGAGAGTTCGAG TTGCTGTGACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAACGCA GTTTTTACTTCTTCCTTTATCCCAGGATATCTTGCACCAAGGCCAGCAACAATGTTTCGAAATCGACTATGCATTGATGG GGGTTTGACGTTGTTTATGCCACCAACATCTGCAGCACAAACCGTTCGTGTTTGTGCTTTCCCAGCAAGTCGTTTGGGAT TACAAGGGATAGGGATCAGTCCAGACTGCAATCCAGAAAACGCTTGTAGCCCCCGACAGCTTTTTAACTGGGCACTTGAG CCAGCAGAAGATGCAGTTCTTGACCGACTCTTTGAGCTTGGGTATCTAGATGCAGCTGTGTGGGCAAAGGAAAACCCAGT GGAAGAAATAGTTCAAGATGATAGTCCTGTCCTTGGAAATAGCATTCCAGGATAG
Protein sequence (LotjaGi6g1v0358500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYRENRNKSNNKKPEKKVKSNGIGRNSNLTTNNNTQPGVSSPPLGMAPTISSPYHAHTFRFPSLNSTLLLRSTTRRRTQ FLTFASSSSSSPNNTPPPPLLPTPPPEKKSFAIATGELFLALASRLIKSRSGVGDDSASVAMFENSAALKKRELYEEERI GAVVEDEIQPDVVWEQRVKDVEAERSRRVVTSPGFSFSAAGLLFPYHLGVAQFLIQNHYIKDTTPLAGSSAGAIVCAVIA SGASMEEALKATKILAEDCRNRGTAFRLGAVLRDVLDKFLPDDAHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINA VFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNPENACSPRQLFNWALE PAEDAVLDRLFELGYLDAAVWAKENPVEEIVQDDSPVLGNSIPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 194 | 194 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 50 | 50 | - | – | |
| PANTHER | 14 | 436 | 423 | 9.5E-128 | – | |
| PANTHER | 14 | 436 | 423 | 9.5E-128 | ||
| MobiDBLite | 22 | 48 | 27 | - | – | |
| MobiDBLite | 84 | 108 | 25 | - | – | |
| MobiDBLite | 92 | 106 | 15 | - | – | |
| Gene3D | 176 | 279 | 104 | 3.3E-7 | – | |
| SUPERFAMILY | 194 | 406 | 213 | 3.14E-24 | ||
| CDD | 194 | 424 | 231 | 2.07118E-132 | – | |
| Phobius | 195 | 215 | 21 | - | – | |
| ProSiteProfiles | 195 | 360 | 166 | 21.98 | ||
| Pfam | 197 | 354 | 158 | 1.8E-7 | ||
| Phobius | 216 | 226 | 11 | - | – | |
| Phobius | 227 | 245 | 19 | - | – | |
| Phobius | 246 | 444 | 199 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Biological process | Lipid catabolic process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0358500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…