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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0358600 |
Transcript ID | LotjaGi6g1v0358600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G26070.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic; TrEMBL-Plants: tr|A2Q498|A2Q498_MEDTR PAP fibrillin; Found in the gene: LotjaGi6g1v0358600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67048295..67050960) extracted from Lotus japonicus Gifu genome v1.2.
AATGTAAATAGCTTTGGGTGTTAGAATCTAATTAAGTTGCTTATACCAAATCTATGGTTACATTTCTATTCCTACACTAC TCATGTTCACTTCACAACCAAGTGTAATGGTTGAAAGTACATAAGCATAAACCCATCTATCAATGGCTCTCTCCACTCTC ACAGCTACTCTGTCATTCAAATGCACAATTGTTTCCAAACCATCACAACCAAATCTTCTCTTCTCATCCTCAACACGACC AAAACTCAACACCTCCATATCTGATTCTGATAAAGGGAGGAACAAAGTTTCATTTTTCCAAGGTTTTCTCACTGGAGGCA GAGATGTTCAGAGCCTCAAGGTGGAGCTCTATCAAACAATTTCACCCCTTGACAGAGGTGCCGAGGCTACTCCTGAGGAT CAACAACTAGTGAACCAGGTTCAAGTGAAAACAACAATATCTTGATAATTTCAGTGGCTTTGTTTCACTGTCTTTTCTTG GTTTCCTAACTTGTGATGTTGACTTGGTCTTGTCTAGATTGCTCAAAAAATTGAAGCTTTTAACTCTGTTAAGGAGCCTC TCAAGTCTGATTCGCTCAATGGAAAATGGGAGCTTTTATATACAACATCTCAATCAATTCTGCAAACACAGGTTTGTCTA TGTTACTTCTAAGGGTTTGCAAATTCAGATTCCTTGTACATTTATACACTTCCATTTTGCTCTTTCTATGATCCAAATAA GGGGTTTGATGACTTTCATATGTGGTATAAATTCTAATGGCACCCTTTTACAGATGATATAGGCGATTTCTGTTTGAAGA AGTATAAATAAAATATCCATCCAATGTGGTAACTAATTACATTTCCCAAATTGAATTTTGAAAATGTGCATTTGGTTTGT TGATTTAACTTCTAGCACGAGTTATGGTTGTTCTTCCTTTTTCTAAGAATTATGATATGATTGATTTTGCTCTCAATTTA TTTGCATTAGTAAAATGAGAATTAATTTCTGTTAAACTATCCTAGAGGCCAAAATTCTTGCGACCAAATGGAAAGATCTA TCAGGCGATTAATGGGGATACTTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAGGTACTGCACTGCACTA CAGCTATAGCCACTACTTTAAATCTTAATAAAGACTTCACATGATTAAAATGGTTTTTGATGCTGGTTTGGTCTATTTGT GGTGTTTGGATAAACAATTTAATGAAGTGTTTATGATCACAAAGCGCTTATGTGATAGATAAGCTAATTTGAGAGGCTTG GTTATATGTAATATGCATGTATGCTAATTCATAAGCTAATCTGAGCAGCTTATGAAAATAAACTCAGAAGATAAGTCATA AACTGTTTACATAAGTTCTCCCAAACACTTGCATAAGAGCTTAGAGCTTAACTTATAGCATAAGCTCAAATAAGTTCTTC AAAACATGAATTTTTCATTTGAACTCTTTCAAGTATGAATGTGTGTCTGAAGCAGTAGTTCAGTCTTAAAGGCCATTTTT CTAAGCTCATAATTGATAAACAAATCCTAAAGTGTAAACTTTATGAGATATAGAAGCTAAATAACTGGTTACCAGAACTT TTGTCTAACATCATCAAATTCACAATGCTTTGGAAGCTTGGAGCTTACAAATTGCCACTATTGCTGCAGGCCACAGCCAA TTTGGTGCCTCTTAACTCTAAAAGGGTGGCTGTTAAATTTGACTTCTTCAAGATTGCAAGTCTGGTAGGTCAATTACTTT TCATATTTAGTCTATTGGTCATATTGTTTGGTAATTCCATGAATCTGTTTTTTCTATTTAAAGAATCAGATAAGATATTA GGTAACCATGCATTCATACTAGGATGAGAGTATCTTTCTTTATTTATCCTTATTTCTTTTGCAATTCACCAACCTTTTCC TGACAAATGAGTCCACAATGCTAAATTCAGATACCAATCAAATCCTCTGGGAGTGGTCGTGGCCAGTTGGAAATTACTTA TTTGGATGAAGAGTTAAGGTAAATCTGTGACTTGTAATAGACTTTTAAGTTTCCTTGCTGAGTACTCTTACGTCTGAATT TCTTTCTTTTGCATGAACTTGACAGAATATCAAGAGGTAATAGAGGTAACTTGTTCATCTTGAAAATGGTGGATCCATCC TATAGAGTTCCTCTTTGATGTTGGTGGATTCTCCAAGAGTTGCTTTGCTTGTACTGCCTTCATCAGTTTACATTTTCAGC ATGAATTAATGCTACCAATGGGCCAAAAATCAATAAATGTTTATCCTCCTAGATCAATTTCTACCCCTTCATTATTTATT TTTATTTGTATATATCCTATTTAAAGTTGTTATTCAAGGTAATATTTCAAGAGTTTAATTTTTATGCACCGACGTTTTAC ACCGTCAACCAATCAGATTTTAAGGATATGAGAAAATCTCTCTTTTTATTTAATTTCATTAATTGACGTGACACATCCTT GAAATCTGATTGGTTGACGGTGTAAAAAAAATTTACACCGTCGGTGCATCATCCTTTTTCTCATATAACATATTTCAATG CATAGCTTATTGAATATTCAATCTTTGCTTTTAAACTTAATTAGTAGTTTAAACCAAGCGAGTTAACGGTTCCGCACTTA GTACCTTAAAGCAAGTGATTAATAAT
CDS sequence (LotjaGi6g1v0358600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCTCCACTCTCACAGCTACTCTGTCATTCAAATGCACAATTGTTTCCAAACCATCACAACCAAATCTTCTCTT CTCATCCTCAACACGACCAAAACTCAACACCTCCATATCTGATTCTGATAAAGGGAGGAACAAAGTTTCATTTTTCCAAG GTTTTCTCACTGGAGGCAGAGATGTTCAGAGCCTCAAGGTGGAGCTCTATCAAACAATTTCACCCCTTGACAGAGGTGCC GAGGCTACTCCTGAGGATCAACAACTAGTGAACCAGATTGCTCAAAAAATTGAAGCTTTTAACTCTGTTAAGGAGCCTCT CAAGTCTGATTCGCTCAATGGAAAATGGGAGCTTTTATATACAACATCTCAATCAATTCTGCAAACACAGAGGCCAAAAT TCTTGCGACCAAATGGAAAGATCTATCAGGCGATTAATGGGGATACTTTGAGAGCTCAAAATATAGAAACTTGGCCGTTC TACAACCAGGCCACAGCCAATTTGGTGCCTCTTAACTCTAAAAGGGTGGCTGTTAAATTTGACTTCTTCAAGATTGCAAG TCTGATACCAATCAAATCCTCTGGGAGTGGTCGTGGCCAGTTGGAAATTACTTATTTGGATGAAGAGTTAAGAATATCAA GAGGTAATAGAGGTAACTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTTCCTCTTTGA
Protein sequence (LotjaGi6g1v0358600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSTLTATLSFKCTIVSKPSQPNLLFSSSTRPKLNTSISDSDKGRNKVSFFQGFLTGGRDVQSLKVELYQTISPLDRGA EATPEDQQLVNQIAQKIEAFNSVKEPLKSDSLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAINGDTLRAQNIETWPF YNQATANLVPLNSKRVAVKFDFFKIASLIPIKSSGSGRGQLEITYLDEELRISRGNRGNLFILKMVDPSYRVPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 18 | 18 | - | – | |
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 2 | 10 | 9 | - | – | |
Phobius | 11 | 18 | 8 | - | – | |
Phobius | 19 | 234 | 216 | - | – | |
PANTHER | 28 | 233 | 206 | 3.5E-102 | – | |
PANTHER | 28 | 233 | 206 | 3.5E-102 | ||
Pfam | 64 | 224 | 161 | 1.1E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0358600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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