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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0359400 |
| Transcript ID | LotjaGi6g1v0359400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G26070.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic; TrEMBL-Plants: tr|I3T8Z6|I3T8Z6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0359400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67106347..67110217) extracted from Lotus japonicus Gifu genome v1.2.
CGGAGCTCTTTGCTATGAGGACGATGGATATTCAGTTATTTTGGGGACGAAATATTATGAAAGTATATTGTGAAGCGGAT TGTTTGGAAGTAGTAGAGACTATTATCCATGATAGATTCAGATTACATGAGCGTGCTAGTATTTTTATGGATATTCACCT TAATTGAGACATTAGCCTTCGTAACATTCCCCACGAAGCTAATGACTCCGTGGATTGCCTCGCTTCTTATGGTGCTAGCC GCTGATGTGTGGTTACTAGCATAGATGAGCCTCTACGCATTGTTGTTCCTTTGTTATCTAGGAATGCTTTAACTTTGTAG TTTTAAAAAATGGATTTTGTCACTAAATAGTTTAATTTCTTATATTATTTTTTTTAAAAAAAAAACCCGCTTTTTATTCA GTCCATTTATTTATTTATTCCTGAAGCCACAAGTGAAAAGGTAAAGGCCAACCGATGTGGGCAGGTAAAGCAGCGCTGTA ACCAAAATGGCCTTATCTTCTCTGCCACTGCTTTCACCTCTCAACACCACTGATACTGATTTCCATCCCAAACTGCTCCA TTTCAATTCACCATCTTCATCTTCTTCTTCTCACTTCCCAGTTAGATTCCCAATCTATCACACTAGCCATTCCCTTGCTA TCTCTGAGAAATGGAGAGCAAAAGTTTCATTTTTCCCTGCTTTTCTCAACAACAAACGCAAAGATGCAAGTACCATCAAG CAAGAACTTCTTGACGCCATTGCACCGCTTGATCGAGGTGCCGATGCCACTCTCGAAGACCAGCAAACTATTGATCAGGT CACTACTTATGTCTCCATATTTATTCTAAAAAATGTGATGCATGTTTGTTTGTTATCCATAATTAGTTCTCTCAATCTCA ATGAAGTTCACATGCATCTTTATTCTTGATTCCTGGAATTTATTCCTAAATAGATTGCACGCAAACTTGAAGCAGTTAAT CCAACAAAGAATCCCTTAAAATCTAATCTACTGGATGGAAAATGGGAGCTTATATACACTACCTCACAGTCAATCTTGCA GACCAAGGTAAACATTTTTTTCCCTTACAGTATTTCATGGTTATATTCATATTCAGGTGATGATGAATCATGTAAGATAT GTTAGCACTATGATTTGTATATATTGAGAAAATAACAGAAAAGAGAGAGAGGAAGAGAACTCTGTTAATCTGAATATTCT ATCATTAATTGGTACTTTCACTGTTGAGTGATACAATGAATATATAGCCTTCAATAGAGACTTCTAGTAGCTCACGTGCT AGTCACGTGATCTGTTAAACTAAGCATTTCACATGCTTCTGCATATATATCCCCCCCTAACAATTTGTCTCATGTTTGTA AGCATTGCATATTGTTTAGTGCTTCTTTAGTATAATAGATTTTAGTAGTTATTTATTGTACATTTATATGCAAGAAGTGA AGTTCAAAATCCTTGCATTACTTGAATTGATTTTCATCTCAAGAGTTATAATGCGAATAATAACACAAAGAAACGCTCTG TAGATTAGATAGAAGGAAATGCTCAATTGGAAATGAATGAATGAGAAAGTTACTGAGATTAACTTTTTGTTTTGTATGTT AGAAGTTTATGATTTTGTTGATTGCTGCAATTTCTATATGTTGATGTTAGGGAAAAGTTGAAATGTGAAAACACTTTCAA TCTTATTACTGGGTGTGTGCATTGGGAATACTTGATTATTGGATTGATACTTTGTGTATGTTTGGTTGTAGTTGGTCCAA AAGCAAATGTGATTTCGCGTATTTCAAAGTATCAATGAGAATTGAGAAGCTATAATTTGTCACATTGAGTGCATAATAAA AGTATCATAGATGTTTGTATTCATTGAAGAGATTCGTAGATTCTAAAAATGGAAAGAGAAGTTTCCTTCTCTCGGTTAAG GACATCCCCCCATGGCACATAGCATGCACTGTCTACATAATAGGTTTTGGTTATTAATGTTTGTATAAGGAATTTAGGAT TACATGTCTTATTGCTTACTCTATCAATTATGAATATGATACATGTAACCCTAAAGTAGGAAGTTTGAGGTTTCTCTTTT TGCTTTACCTCGTCTCTTCTTCCTTTGCCATCTACAATCTTTGCCTCCATATTTTGTACTAACTTTGTCAATATTGTAAC AACAGAGGCCAAAGCTGTTGAGATCAGTTACAAATTACCAAGCCATCAATGCTGATACTCTCAGAGCCCAAAATATGGAA TCTTGGCCATTCTTCAACCAGGTGACACTTGATGAAATTGAGATAAGTTTTCACCATTTATGCATTCTCATTCTAACATT TGCATATGTAATGAATCAATATTGTGAAGGTGACAGCTGATTTGACCCCTGTAAATACAAGGAAAGTGGCTGTGAAGTTC GATACTTTCAAAATTGCGGGATTTGTAAGTATTTGGAGTCTCAATAGTTATCATTGAAACTATATTTTATATTGCTGTAG GAATGAGCATATGCAACTTGGTAATTATTCTCGCGTTGCTTTGAGGACCTTAGGAATGAAAAATGAAATTCTGTTGAGGT TCTTTTCAAATGCTAATTATCTAACTAGCTCCAAAAAAGTCCATTCACAATACAGTAGTTTAGTATATACTACTATCCGA CATCTGCAATTCTGTATGGATGTGGTACCATGATAAATAAGTAACATCTATGTATGTTTCTGCACTTTTGTAGATTAAAT AAGTAATATCTATCTATGAGCATAATCTATTTCATCATAATGTACTTGTGCAGATACCTGTTAAGGCACCTGAAACAGCT CGTGGTTCACTTGAAATAACATACTTGGATGAAGAGCTGCGGTGAGTTACCAAATTGCTCATAAAGATAAAAGAAGTCCA ACATTCTTTAGTGTGTTTGGTTCCACGATTGAGTCTTAGAAATTATTTCTCATTGACCAAAATCACTTTTAGTCTTTAGA TGATCATTTAGATGTTTAGCAATCGACATAGAGAATTGTGGAGAAGCTAGAGATTGTAGTTTCTGCGGTGAACATAATAA AGTGAGATTTTATAGCTGAATTCACAACATTACTCTATAGAAATCACTTTTCGCATAAACATATCTAGACATAAATCACT TCACTTTCAACTTGCCTTAACTCACTCTTACGATACCCAATTTTACCTAAATCAATTTTATCCAAAATTAATTCTGATAA TGTTGCCAAATACACACTCTGTTAATGAACCACATTGGACCTTTTTACCTCATCTCCACTGTAAATTACTTTACTCTGTC TGGTATAGATATTAATACTCGTGTACACACTTTCTCATCATAATGTAACAGGGTATCTAGAGGTGACAAAGGAAACTTGT TCATCTTGAAAATGGTGGATCCCACTTACCGGGTTCCGGTATGATGTGTTGTTGGTATTGAAATGCAATACTTGCGTTCA TCTTGTCATTGTGTTCAAGGAATTCAAAGTACTGCAACAGCTTCCTGAAGTTGGAATACTAGCACTGTCTCAGTACTCAA GTTCAAGCTGACTTAGCATGTTGGGACTATGCTTTCTATACAAAAATCTCAGATAAACTGAAATAGTTTGCATATAGTAT ATAATATTACTCACTGTAATTGGGTTTCCTATGTTTTTTCCCTTTAAATCTGTATTATGTGGAAAATTCCATTCTAGAGA AGTGGTATGTGGAAAATTCCATTCTAGAGAAGTGGTTTTCAGATACTTGAAAACCGATATGAATGTAATAATGTATTACC AGCTTTGGCTACGGTACAAAGACAATGAAAAAAGTCTTTAACTTTGTGAGACCACTATACCATTCTATATATTACTTGAA AATTGGATGGTTTTGATGTGTAATTTCGAAA
CDS sequence (LotjaGi6g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTATCTTCTCTGCCACTGCTTTCACCTCTCAACACCACTGATACTGATTTCCATCCCAAACTGCTCCATTTCAA TTCACCATCTTCATCTTCTTCTTCTCACTTCCCAGTTAGATTCCCAATCTATCACACTAGCCATTCCCTTGCTATCTCTG AGAAATGGAGAGCAAAAGTTTCATTTTTCCCTGCTTTTCTCAACAACAAACGCAAAGATGCAAGTACCATCAAGCAAGAA CTTCTTGACGCCATTGCACCGCTTGATCGAGGTGCCGATGCCACTCTCGAAGACCAGCAAACTATTGATCAGATTGCACG CAAACTTGAAGCAGTTAATCCAACAAAGAATCCCTTAAAATCTAATCTACTGGATGGAAAATGGGAGCTTATATACACTA CCTCACAGTCAATCTTGCAGACCAAGAGGCCAAAGCTGTTGAGATCAGTTACAAATTACCAAGCCATCAATGCTGATACT CTCAGAGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGGTGACAGCTGATTTGACCCCTGTAAATACAAGGAAAGT GGCTGTGAAGTTCGATACTTTCAAAATTGCGGGATTTATACCTGTTAAGGCACCTGAAACAGCTCGTGGTTCACTTGAAA TAACATACTTGGATGAAGAGCTGCGGGTATCTAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCCACT TACCGGGTTCCGGTATGA
Protein sequence (LotjaGi6g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSSLPLLSPLNTTDTDFHPKLLHFNSPSSSSSSHFPVRFPIYHTSHSLAISEKWRAKVSFFPAFLNNKRKDASTIKQE LLDAIAPLDRGADATLEDQQTIDQIARKLEAVNPTKNPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADT LRAQNMESWPFFNQVTADLTPVNTRKVAVKFDTFKIAGFIPVKAPETARGSLEITYLDEELRVSRGDKGNLFILKMVDPT YRVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 244 | 244 | 8.0E-127 | – | |
| PANTHER | 1 | 244 | 244 | 8.0E-127 | ||
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 245 | 231 | - | – | |
| Pfam | 76 | 235 | 160 | 3.7E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0359400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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