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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0361200 |
| Transcript ID | LotjaGi6g1v0361200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072VJ42|A0A072VJ42_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi6g1v0361200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67308773..67312538) extracted from Lotus japonicus Gifu genome v1.2.
AGCGGTGGTAGCGAGTTTGTAAACCATGCGATGAATATGAATATGAGGAGGAGGCAACCACCCCCTTCCTGTTTGCAGTC GTTGCCGGATGAAGTGATATTGGAGATCTTTCTTAGGGTTCCGGTGAGATCCGTTATAAGATTGAAGTGCGTCTGCAAAT CATGGAAAATTCTAATCTCCAGTCCCCAATTCGCCAAGGACCACTTTCGTATGAAGTCATTTATCTCGTCCGTTACAAGC ATGCGATTGGCCTCTTTGGCATACTATAATCACCGGAAATTAATAACAACATGTCCTGTGCAGTCATTGTTGGAAAACCC ATTAGCCCGTCGTGAAACCTCTAGCTTCACCGTGGAAAACAGATGGGTAGAAATTTTAGGCTCAAGCAATGGGTTGCTGT GTTTGGCTGATAATTTTTGTTTATTCAGATTGATCAACCCGTTTACCAGATCGGCATCCAAGAAATCACCACCCCTTCCT CTTCGTCTTAATGTGTTTAAGGATGAGGTCGCACAGTATGGTTTTGGTTATGATCAACTTAACGACAAGTACAAAGTGCT CGTTACGTATGGCTTTCCTAGAGTAACCAAACTTTATACCTTTGGTACTCAGTCGTCTTGGACAACAATTCAGAATTTCC CATGTGATCAGGTGCCGCAGATGTGGTATAAGGCAGGAAAATTTGTGAGTGGTACTCTTAATTGGTTCGTTCTGGAAAGA AATGTTATTATTTCCTTTGATCTGGAGAAGGAGACCTATGGTGAAGTGTTGCTCCCTCTTCATCTGGAAAGTGACCACCC CAACCAGCACAGGGGTCACAACCCCAACCAGCAGATTGATATTGATGCCTTGAGTAACTGTCTTTGCTTGTGTTACTTTA ATGATATTCATTATGTTGTGTGGGTCATGAAAAAGTATGGCAATCAACAATCTTGGACGAAATTGGTGTTGATCCCTCAT TCCAATTTAAAAATGCATCGGCTAATGTGCATCGATGCTTCTTATCGCTTTGCTTACCTTCACCCCTTGTGGATTTCAGA AAACGCCATAGCTTTTAAGCGAACTACTGATCTCCAATTAGTTATTTATAAGAATGGCAAGATGGAGGATGATCGTGAGA TCATGGAAAGGGATACGCATAGTGATCTACATATTTACCGTGAGAGCTTAATTTCACCACCCTAGAGTCTTTTTAAGTTT ACTCTTTTACTACATAATAATAATATAGTTTTCAGGAATGGTTTTGCATTATTGTGGAGTACTCTTATTCTGCCACTGTT GAGAGGGATCGATTGCTTCTTCTTTTCCCTCAAAAGGAATTGTGGATCCACCACCTGAACCGGTAACTCATGCTCTCTTT GTAGACTTTTATTTCATGGTTGAATATTATAATTTATAAAATGAGGCTTGGGTTATTCCTCGTATTACTAGTGGTTGGTT GTATTCCTTAGATGTTCTCTTCTCTTCTTCATCTTATGTTTAGATAACAGATTTATATTTATGTGATGTCTGAGGACACA TATTGCACAAAGAGTATATCGATGCTAACTAGTCTAATAACAAATTGTCATCTTCCAATTTAAACTGGAATCATTTTTTG TATGTGCTACACAAGGAATGAAAAGAAACTTTAAAAATAACAACAATAGAGATAGATAAGAAGGCAGTGGGTTCTGATTT CTGCACCGGATATTAGAATTAGTCGACCAAATTGAAAACCATATATTTATTCATTTCCCTGAAGATTTTTATCAGCTATA GGAATGGAATATTGATAGGAATTATCTGCATTTTGATCTCTGCCAATCATATATCTAGTCCTGGTTTAACAATGCACATT GATCTCACCAATCTTTTTTTTGGCTAAGTCTCAATGTACGTACAAAATGAAGAAAGATACCCTCTCAGTCAAGCCTCTTA AGTCTTACTTATGACTCTCATAGTTCAATTCACCTCACAGACCAGTCCAACATTCTGCAATTTCAATCCCAATTCATACT TTTGCATATGCAGACTTTCAATTATCCCATGCCCAGAAGCAGATATCATCAACTGTATATGAGCCCTTTCAATTTCCACT TATTACATACCTGGACCCGCAAGACATTTTAGTACCCTTGATACAAGAAAGCGCCACATCTAATGTGTTATGGGATGTAT TGTGACTAGGATAGTAGCCTGTTTCCGTGTGGAAGAGCGATTCTACAATTTAACATAAGACTTAATTGCACATTTTCTCT ATGATCTTTCACTTATGTATAATTTGTCTCCCACATATTTTAAACAAGTGAATTTACTCTTTCATGTCCCAAGATGTGAA AATTGGACCTTTCCGTTAACCTGTCATCCAACAACTAACAGAATTGGCTTATGTGGCATCCATTTAACACGTGTATCCAA CATTTTTGCCACTTTGTTGCCAACAAAATCTGCAAGTTCACACAGAGAACCCACCCATTACCCATACTTTTGTTTCATTT ATTATTCTGTTGCTTAATCAGACATTTATACCTAAAAAGGCTTTCATTTTTATGTCAAAAGCAATGAAGAGAGAAGAGTG AAAAATATTCAACCTTGTAACTACCCCCATCTACTTCTTTTGGTCAATAATCAATACTTTCAACCTCAATGCTATGACTC TATAAGCATATAAACATCTAACTATTGAAACCTGCCACATTAAGACCATTTTCTGGTTTGTTGGTTTCAATTTTCTCTAT AATGACACAATTTCAGGAATGAAGCAATTGAAACAGCACCAATGGCTTGAAACAAGGTAGAATTGAAAGAAGCTGCGGTG AGAATGGGCATGGGAAAACTAGTAGCACCTGGGACCACACTGGAAAAACGAGTCCCAGGGCCAATGTTGGAAACCCCATG AAGTGCCTCAGACCACCACTCATCCACCGCAGAATCCCCCAAGTTCCCAATTTTCTCCTGCAACGTCAGCCTCTTCACCA GGTCGGCAACCCTGTCCGCCACCGGCAATGACTTGTCGCACAATCCAAAACTAGCAAACGAAGCGTTCTTGGTAACATCG CTGGCAAAAGGAGGTGCTGTTTGGCCACAAACTGAAGTAATGTGTCATTTATGAGTTGTGGAAAATGGAAGGAAAGAAAA AAGTAACCGCATTAACAACACAACATTGTTGTTTTTTAGCGACTTTTGATGGAAAATTAAGGAGGGAAGAAAGAAAATGG AAGGAAAAAAATGCAGTTGTTGAATTTGGCTGAGAGCCAAAAGAACAACTGAGAGAATCTACGTATAATTTGATGATCGT GGTTTCTGGCTAAATATGTGGCTTACTAAGTGTAACCATAACACACTATAAATTAGCAATAGTTCATCCTCACACATTAA AGTAAATGAAATGTGAAATAGACAATAAGACAAGGAAAAAGAAGGTAAAAAGAGATTGACAAAGAAAGGAATAAAAAGGA AAATTACTATTTCATTAAAACATGAATTTTATTTCCTGACTCCTGAGTTTCTCAGTTTGTCCAGTAGGCAGGCAACACAA TCCTATTTTCAATGTTATAATGATGGTTCTTATTTTCCCATGTGGAAGCACTTTTGACTTTAACAGAAGAAAGATCTGCG CTTGCTGCTGGTGAGATTTCAACTACCCTGACCCTAGACATTAGAGAGCTTTATTTAAAAGCTAGTATTTATTTCTTTAA GCTTTATGAGGTGTATGCAGTAATTCTCAGACAAAGTTTATATAACCATGGCTGCTGTTAACCTTTGTGGAAAGTCTATA TCACAT
CDS sequence (LotjaGi6g1v0361200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATGAATATGAGGAGGAGGCAACCACCCCCTTCCTGTTTGCAGTCGTTGCCGGATGAAGTGATATTGGAGATCTT TCTTAGGGTTCCGGTGAGATCCGTTATAAGATTGAAGTGCGTCTGCAAATCATGGAAAATTCTAATCTCCAGTCCCCAAT TCGCCAAGGACCACTTTCGTATGAAGTCATTTATCTCGTCCGTTACAAGCATGCGATTGGCCTCTTTGGCATACTATAAT CACCGGAAATTAATAACAACATGTCCTGTGCAGTCATTGTTGGAAAACCCATTAGCCCGTCGTGAAACCTCTAGCTTCAC CGTGGAAAACAGATGGGTAGAAATTTTAGGCTCAAGCAATGGGTTGCTGTGTTTGGCTGATAATTTTTGTTTATTCAGAT TGATCAACCCGTTTACCAGATCGGCATCCAAGAAATCACCACCCCTTCCTCTTCGTCTTAATGTGTTTAAGGATGAGGTC GCACAGTATGGTTTTGGTTATGATCAACTTAACGACAAGTACAAAGTGCTCGTTACGTATGGCTTTCCTAGAGTAACCAA ACTTTATACCTTTGGTACTCAGTCGTCTTGGACAACAATTCAGAATTTCCCATGTGATCAGGTGCCGCAGATGTGGTATA AGGCAGGAAAATTTGTGAGTGGTACTCTTAATTGGTTCGTTCTGGAAAGAAATGTTATTATTTCCTTTGATCTGGAGAAG GAGACCTATGGTGAAGTGTTGCTCCCTCTTCATCTGGAAAGTGACCACCCCAACCAGCACAGGGGTCACAACCCCAACCA GCAGATTGATATTGATGCCTTGAGTAACTGTCTTTGCTTGTGTTACTTTAATGATATTCATTATGTTGTGTGGGTCATGA AAAAGTATGGCAATCAACAATCTTGGACGAAATTGGTGTTGATCCCTCATTCCAATTTAAAAATGCATCGGCTAATGTGC ATCGATGCTTCTTATCGCTTTGCTTACCTTCACCCCTTGTGGATTTCAGAAAACGCCATAGCTTTTAAGCGAACTACTGA TCTCCAATTAGTTATTTATAAGAATGGCAAGATGGAGGATGATCGTGAGATCATGGAAAGGGATACGCATAGTGATCTAC ATATTTACCGTGAGAGCTTAATTTCACCACCCTAG
Protein sequence (LotjaGi6g1v0361200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMNMRRRQPPPSCLQSLPDEVILEIFLRVPVRSVIRLKCVCKSWKILISSPQFAKDHFRMKSFISSVTSMRLASLAYYN HRKLITTCPVQSLLENPLARRETSSFTVENRWVEILGSSNGLLCLADNFCLFRLINPFTRSASKKSPPLPLRLNVFKDEV AQYGFGYDQLNDKYKVLVTYGFPRVTKLYTFGTQSSWTTIQNFPCDQVPQMWYKAGKFVSGTLNWFVLERNVIISFDLEK ETYGEVLLPLHLESDHPNQHRGHNPNQQIDIDALSNCLCLCYFNDIHYVVWVMKKYGNQQSWTKLVLIPHSNLKMHRLMC IDASYRFAYLHPLWISENAIAFKRTTDLQLVIYKNGKMEDDREIMERDTHSDLHIYRESLISPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 113 | 110 | 1.5E-10 | – | |
| SUPERFAMILY | 9 | 66 | 58 | 1.44E-16 | ||
| ProSiteProfiles | 12 | 62 | 51 | 11.432 | ||
| Pfam | 14 | 55 | 42 | 8.7E-11 | ||
| PANTHER | 16 | 322 | 307 | 1.2E-38 | – | |
| PANTHER | 16 | 322 | 307 | 1.2E-38 | – | |
| SMART | 18 | 58 | 41 | 6.1E-8 | ||
| TIGRFAM | 120 | 317 | 198 | 2.9E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0361200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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