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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0362000 |
Transcript ID | LotjaGi6g1v0362000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kinase family protein; TAIR: AT1G60940.1 SNF1-related protein kinase 2.10; Swiss-Prot: sp|Q9C958|SRK2B_ARATH Serine/threonine-protein kinase SRK2B; TrEMBL-Plants: tr|I3SRU6|I3SRU6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0362000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67401721..67403507) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTATGCTGCAGGTGGAGAGCTCTTTGAACGAATTTGTACTGCTGGAAGATTCAGTGAAGATGAGGTATGCTATTC AAATTCAAATTCAAATTACTTTCTTTCACCTTCAAATTCTATCATGCTTTTCTCATTCTTCTTATTTCCAGGCTCGCTAT TTCTTCCAGCAGCTCATCTCAGGAGTTTGCTACTGTCATGCAATGGTAAATCTCGGAATGGATTTTCGTACTTTGTTTTT GCCTCTTCTTTAGGGTTGATTTTCTATGTAATTAATTTTCCTTCTTTTGTAGCAAATCTGCCATCGAGACTTGAAGCTGG AGAACACCTTGTTGGATGGCAGCCCTGCCCCTCGGCTCAAAATTTGTGATTTTGGTTATTCCAAGGTTTAATTATGGAGT CATATCACTACCAAATACATCATATCTCACAAGTTTTGCTTCTGACACCCTTTTTTTTTATTTATTTTTCTAGTCATCTC TGCTTCACTCTAGGCCTAAATCTACTGTGGGAACTCCAGCATACATTGCACCAGAGGTTCTTTCACGTAGAGAATATGAT GGAAAGGTAATTTAGTTTCTATCTTGCAATATCAGTGAGATGTATTGGAATGGTTCAACACACCCAAGGACAATATCTCA TGCAATTATAGATCATGACTTATGTTTCCACATATAACTGACGGAAATCAATAATAATATGGACAACATACCATGTATGA ATTGAGTAGTTTGGAATGTAAATTATGGATATGTAAATTACGGAAATCATGACTTATGCGTAATGGTTAATTGTGATTTC AAATGCTCTTAAAAATTTTAGCCACATCAAGGAAAGGGTATGCTTACTTTCATGATCTCTGTTTGTTCTGACAATTTGCC AGAGAGCAAAATTTGAAGATTTTCAGCCTTGAAATGGTTAACCTTTGCTTGATGAATTTTCAATGTTTTATATGTTGATT GATGATGTTTTCATTTTCTTTGTATTCTATTCTGCTTTGTGCCTGTTCAGTTGGCAGATGTATGGTCCTGCGGAGTGACT CTTTATGTAATGCTGGTGGGTGCATACCCATTTGAGGACCCAGAGGATCCCAGAAATTTCAGGAAAACCATAAATGTACA TATGTTTTTCCCCTTCATCTTAGTTGATGATAGATTTATGAAACGCCTACTCTTTCTGACTCTCCATATTCTTATACAGA GAATTATGGCTGTTCAATACAAGATTCCAGACTATGTTCACATAACTCAAGACTGTAGACATCTGTTGTCTCGCATTTTT GTTGCAAATCCTGCTAAGGTATGCAAATGCTATGCTGCTGAACAGCACTTCAGTGTGTTATTTATCTGATTTTTCTTTTA AAGGAACTTTGTCAAATTTTTCAGTCTAGGTGCATGATATCACTTGAAGTTAGCTTATTGTTGCTCAACAATTTCATTGT CTCGCATTTTGTGTTTTTGTGATTTGCTGCAGAGAATCACCATCAAGGAAATTAAGTCTCATCCATGGTTTTTAAAGAAC TTGCCTAGAGAGTTGACAGAAGTGGCTCAAGCTGTCTACTACAGAAAAGAAAACCCAACTTTTTCCCTTCAAAGTATAGA AGACATTATGAATATTGTTGAGGAGGCCAAGACCCCAGCTAAAGTACCCAGGTCAATCGGAGGGTATGGTTGGGGAGAAG AAGATGATGATGAAACAAAAGAAGAAGCAGAGGCTGAGGTGGAAGAAGATGAGTATGAAAAAAGCGTCAAGGAAGCACAG GCTAGCGGAGAAATTAATGTCAGTTAA
CDS sequence (LotjaGi6g1v0362000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTATGCTGCAGGTGGAGAGCTCTTTGAACGAATTTGTACTGCTGGAAGATTCAGTGAAGATGAGGCTCGCTATTT CTTCCAGCAGCTCATCTCAGGAGTTTGCTACTGTCATGCAATGCAAATCTGCCATCGAGACTTGAAGCTGGAGAACACCT TGTTGGATGGCAGCCCTGCCCCTCGGCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTCTGCTTCACTCTAGGCCT AAATCTACTGTGGGAACTCCAGCATACATTGCACCAGAGGTTCTTTCACGTAGAGAATATGATGGAAAGTTGGCAGATGT ATGGTCCTGCGGAGTGACTCTTTATGTAATGCTGGTGGGTGCATACCCATTTGAGGACCCAGAGGATCCCAGAAATTTCA GGAAAACCATAAATAGAATTATGGCTGTTCAATACAAGATTCCAGACTATGTTCACATAACTCAAGACTGTAGACATCTG TTGTCTCGCATTTTTGTTGCAAATCCTGCTAAGAGAATCACCATCAAGGAAATTAAGTCTCATCCATGGTTTTTAAAGAA CTTGCCTAGAGAGTTGACAGAAGTGGCTCAAGCTGTCTACTACAGAAAAGAAAACCCAACTTTTTCCCTTCAAAGTATAG AAGACATTATGAATATTGTTGAGGAGGCCAAGACCCCAGCTAAAGTACCCAGGTCAATCGGAGGGTATGGTTGGGGAGAA GAAGATGATGATGAAACAAAAGAAGAAGCAGAGGCTGAGGTGGAAGAAGATGAGTATGAAAAAAGCGTCAAGGAAGCACA GGCTAGCGGAGAAATTAATGTCAGTTAA
Protein sequence (LotjaGi6g1v0362000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYAAGGELFERICTAGRFSEDEARYFFQQLISGVCYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRP KSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTINRIMAVQYKIPDYVHITQDCRHL LSRIFVANPAKRITIKEIKSHPWFLKNLPRELTEVAQAVYYRKENPTFSLQSIEDIMNIVEEAKTPAKVPRSIGGYGWGE EDDDETKEEAEAEVEEDEYEKSVKEAQASGEINVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 270 | 270 | 7.1E-159 | – | |
ProSiteProfiles | 1 | 184 | 184 | 36.047 | ||
SMART | 1 | 184 | 184 | 1.6E-41 | ||
Pfam | 1 | 184 | 184 | 4.5E-49 | ||
SUPERFAMILY | 1 | 217 | 217 | 6.39E-59 | ||
Gene3D | 1 | 232 | 232 | 1.5E-65 | – | |
PANTHER | 1 | 270 | 270 | 7.1E-159 | – | |
ProSitePatterns | 43 | 55 | 13 | - | ||
MobiDBLite | 231 | 275 | 45 | - | – | |
MobiDBLite | 239 | 256 | 18 | - | – | |
Coils | 247 | 269 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi6g1v0362000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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