Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0362100 |
| Transcript ID | LotjaGi6g1v0362100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|V7BVD4|V7BVD4_PHAVU Transmembrane 9 superfamily member; Found in the gene: LotjaGi6g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67406892..67412367) extracted from Lotus japonicus Gifu genome v1.2.
ATCTGTTATTATCGAACCCATCAATCCAAGGTTGGTTTAAAGTAATTGAGGGTGTAGGAATTTCTGTCTCTCTGGACTTC AGTAAGATATGCTTTGTGTTATGCATGAGCTTCATTTTGTATCTAGAATGTACTTCTAAATGTCTTTAGGCAGTTGTACA TGTACATAGACACACTTATAATGGTAATGATTTGAATGTGTATATTCTATTTGTAGCTTCCAGTAATGCTATCTCTTTAA AACATGCATTTCATTTTATTTCAGTATCAACAAGATGACCCGGTTACCCTTTGGGTGAACAAAGTTGGTCCGTATAATAA TCCACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCGTCCACCTGGTAGTGCTGGACACAAATGGGGTGGTCTCG GTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAAATTGAGATCAAGTACCTAGGTATGAAGGCTTCTTTGCCCTAT ACTCCTATTTATTTCATACAAAGGCCTATCTATATACAAAACTGTCTTTAACAAAGATTTTTGTTTTTCCTTTTTTAGTA AATGTGGACAAGACCACCTTTTGCCGTTTGAGTCTCAATGAGGCAAATGTCAAACAGTTCAAAGATGCAATCGAGAATAA TTACTGGTTTGAATTCTTCATGGGTATGTTGTGCGTTGTTTATTTCTTTTGCTTATTACTCATAAAATTAATAAAATGAT TGTACTTTTGGAGAATCAATTTTTTTTTAGAAGCTTGCTGTATTTTTTTTTTCTGCATTTGGCCATTGCATAAACTTAAG AGCTGGGGTAAATAATATCCAACCCACAGGATATTGCTCCTTACTCTGTCCTTGATATCCAATCAGCTGCTTTATTTTAC AACCTTGGAATAAACTCCAGGGAGATTCCATTGAAAGATGCCAACCGTAGATCTTTTAATTGTGAATTATATGTTACAAC AACCTGGAAGATACATGTAGTTCTACATTATTGCTTGAGAGTCTGGGAAGTTATTTTAATGCCAACTGGGAAGGAGAAGC TAGCAACTGGGGCCTTAGATTAAGTTATTTAATGCATATATTTCTGCTTTTTGTGCTATAGTTTTACTTGAAAGTGATTT GTTAAAGTCCTTTACAAACTTGGCTTATAGCTTCTTTGTTATCGCTGTGGCTTGACCTAGATTATTAGTATTCTTTCCAT CAGTGTTATCAAATAGCGGCTATAGCGGCCGCGACCCGCTATAGCGTAGCGGATTTTAGGGCCACCGCAATCGCTACGCC GCGACATAGCGGCCACCGCGAGAAACGCAATTGCGGCCGCGACGGCCGTAGCGGCGCTGGAAGCTAAACAGAAATAGCGG ATTTTCAGGAATACTGCACGTTTTTTTTTTATTTTTTAGGGTTTTTAAATATGGTAATTCAGTAATTCTTGACTAGTGGG CCACCAACTGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTTTCTTTTTCTGTTTCACTGCTTTACTGCCCAAT TAACTCCCCATTAATTATTTTTTTCTATATTTACGCTTCATCATGAAGAATCACGACAGAATTGAAAAGGTTTCCAAAAT CCTAATTCTCCTTCTCTCATCCTCCTTCTACAAGCCCCATTAATTCGTTTTTGTTGCATTTCCTTTTTCTGTTTCACTGT TTTAAGACTTGTGTTTGGTTTATGTTGTTTTAAGTCTTTTGACATTTGATTTGAGCTGGTGGCACCCTTTAATAGTTAAA ATTTGGTTGTTAAAAATGATGATTTTATGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTTTTATGCAGTTTTTATTT GTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATAGATGTCTGATAAGCTGCTTTTTTTTTTTATAATATTTTACTTAT TTTAACCGCTATGTGGTTACCGCTATTTGCTCGTGACGCTATCCGCTAAACGCAATAGCGGATTTTGGCCTCACCGCGAT TTTCCGCGATCGCGATTTGACAACACTGCTTTCCATATGTTATTTGTAACCAAGATGATAGGCTTTCAAGAAAAAATTGA CAGTCATACTACATGCTATTTCGTTCATATAAATTGTTGATGTATTTGTGATAAAACTTACATCTTAGACATTGTACAGC ATAAAACACTGAGTTAGAACACTTAGGCCTGGAAGAAGTCCCCTTCTCAATTGGGATCCTTTAATTATGACTACCACTGG TCTCACCAGGCTGGGTGTTTTGACTTTTCAGATATACATAGTTATCAAAACTGAAAGAAGTATGTAGTTAATAAGTTCTT ATTTGAAATCATTGTTTAAGCATTCTTGACTGATATTATAATCACCTGAACTAAAAAACAAGTAAGGGCTGGGATCTAGA AAAGGGTTTGCCCTACTGTGTAGGTCTGTACTAGGTAGCTGTACCTTGCATTTGCAAGAGGCTGATCACATGAACATGTT GCCTCCGGGTCACATGGTAACAGCCCAACCATTGAGCCTAGGCTTCCATTCAAAAGTATGAAGACTATTTGTTTAAGGAT ATGATTAAGTAATTTTCAATACCTTAGACTTAACGAGCATTAGAGAATTGATATTATGTGTTCTTGATAGGTATTATGAT ATGAATGAGGGTTTGTTCTGTGGGGTGGCCCTTATTGTTTGTTTCCAATTTTCATTTTAATAGCTTTGTTTTAGAAAAAA TGCTGAATAACTTACTCTTTGGCATTTTTTCTTTCCTTGGCTGTCATATCTGCTGGTCTTCAATGCGATAAACACAAGTT CAGATGATCTTCCATTATGGGGTATGCCTATTACTGCCTCTGCCTCGTTCTCTTTATTTCGTGCTCCCTCTCATCCTATT TATAAGATCTTTTCAACTAAATCTCACAAATTAAAGATGTTAAAATTAGATGATGTATTTTTTTATAAATATTCCAGCAT TTCCATGTTTACCACTATTTGATTTCAAACTCTACATTAATCAAAACCTAGGAACTAGAAAGGTTCAAAATTCATGAAGG TCAAATAAGAAAAAAATGCTTCTGAAACTTTTTGAAGTGTTTTATATTAAGGACCATCAAAAGTTTTACGAAGGGGTCTT ATAAAAAAGACAGGAGGGAGCGTGACTTCGCATTTCATTTGTTGATCATTATTGAAGGTTCTTTTTATGTTTAAGGGTAT GTTGGCGAGCTACATCCTGATAAAAACAGTGACAATGGAAAGCATGTCCTTTACACACACAAGAACGTCATTGTTAAATA CAATAAGGATCAGGTAAGAAGTTAATTAAATCTCCCTGATCTTATGAGCTGTTTTGGGTGTGAGAAGTTCCTTACTTAGT TCTGTTTACTTGCAGATCATTCATGTGAATCTTACTCATGAAGACCCAAAGTCTTTGGAAGTAGGAAGATCTTTGGACAT GACATATTCCGTCAAATGGATTCCTACTAATATCACTTTCAGACGCCGATTTGATGTATATCTAGACTATCCGTTCTTTG AGCATCAGGTGAAAATTAATGCTGCCAGCTCTGTATCTTAGATTGAAGTGGTGTTTATCATTGATTACCTGCTATGCATT TAATTTTGTGGCCATGTCAGTGAGAAAACTTTGCTCCTTTGGCTTCTGTAGATTCATTGGTTCTCCATTTTCAACTCTTT CATGATGGTCATCTTTCTAACTGGATTGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTC GGGAAGATGATGATTTGGAAACTTTGGTGAGGCTTTGTTGACTTTGTCTGTAATTTATTTTATTTGTAGAATATCCATTC CTCTTTCATGGAAAATTCATTTGGTCAATTGTCAAACTTTCAGGAAAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTG TGCATGGTGATGTTTTTAGGCCTCCTCGCTATTTGATTCTTCTTTCAGCAGTTGTTGGCATAGGTGCTCAGCTTGCAACG CTGGTTCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGCTGTATGTTGGGTAAGTGCATTACTAATTATAATGTTACTC TGAATAATGGTTTTATTGAGATAGTGTGATTGTGCACAAAATAGACTTAATGCAATACACATTTGTTATTTTCTTCTCAT ATATCACTAGTCACAACTATTGTTGTCTAGCTTTCCTATTGACCATATTTTGTTTGCCCATTTTGTTTCCCCCTTCCTTA TTATGTGAATTTCCTTAAATGTGCAGGCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCAT TGCTGGTTATGTGAGTGGGGGGATGTACTCGCGAAATGGGGGTAAGAGTTTGCACAGAATATTGTTGCATGCTCTTTCAA GTTTGTTTTGGTGGCTGTCTCTCTCTCTCTCTCTCTCTTTGAACAATTATAACCATGCTTATCTTTTTCAGGTAAAAATT GGATTAAATCCATGATTCTCACAGCTTCACTGTTCCCATTCTTGTGCTTTGGAATTGGATTTATCTTAAACACAATTGCT ATATTCTATGGATCTCTAGCAGCCATCCCCTTTGGTACAATAGTTGTTGTCTTTGTTATATGGGCTTTTATCTCTTTCCC TCTAGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTGGCGCTCCAAATAATCCCTGTCGTGTAAAGACCATTCCTC GTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTCTATGATGGGAGGATTGCTTCCCTTTGGCAGCATA TTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGAGTTACAAAGCCATGACTTATTTGTGCAGAAA GAAAGATTTTTCTTATGGGTCTGGTAGGTTACTTTCACTTTATCAGAGCAAAGCAAACAATAATTTCTTGTGGAAATGTT TTAAATAGAAACTCTTGTATTCCTGTGAAATAAACACATGTGCTTGTCTTACATTTTTTTGTTTCCTCTTCTGCTTTTTG ACAAACAGGTGTACTATGTCTATGGCTTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATC GTGGGGACATACTTTTTGTTGAATGCTGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGT TTATGTGTATTTGTACTCAATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTG GATACACTTTGATGTTTTGTCTAGGACTGGGAATTCTCTGTGGTAAGTCTTCAATTTAATTTTAATCTCTGTTAGGATCA CGCACACATTCTACAGAAGTGAAACCCTATTTTTCTTCAAACTTGCAGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTT GTGAGGAGGATCTACAGAAACATCAAGTGTGACTAA
CDS sequence (LotjaGi6g1v0362100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATCTTCCATTATGGGGGTATGTTGGCGAGCTACATCCTGATAAAAACAGTGACAATGGAAAGCATGTCCTTTA CACACACAAGAACGTCATTGTTAAATACAATAAGGATCAGATCATTCATGTGAATCTTACTCATGAAGACCCAAAGTCTT TGGAAGTAGGAAGATCTTTGGACATGACATATTCCGTCAAATGGATTCCTACTAATATCACTTTCAGACGCCGATTTGAT GTATATCTAGACTATCCGTTCTTTGAGCATCAGATTCATTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTTCT AACTGGATTGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTCGGGAAGATGATGATTTGG AAACTTTGGAAAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTAGGCCTCCTCGCTATTTG ATTCTTCTTTCAGCAGTTGTTGGCATAGGTGCTCAGCTTGCAACGCTGGTTCTTCTTGTCATCTTGTTAGCTATTGTTGG GATGCTGTATGTTGGGCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCATTGCTGGTTATG TGAGTGGGGGGATGTACTCGCGAAATGGGGGTAAAAATTGGATTAAATCCATGATTCTCACAGCTTCACTGTTCCCATTC TTGTGCTTTGGAATTGGATTTATCTTAAACACAATTGCTATATTCTATGGATCTCTAGCAGCCATCCCCTTTGGTACAAT AGTTGTTGTCTTTGTTATATGGGCTTTTATCTCTTTCCCTCTAGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTG GCGCTCCAAATAATCCCTGTCGTGTAAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTA GTTTCTATGATGGGAGGATTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTA CAAGGTGTACTATGTCTATGGCTTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATCGTGG GGACATACTTTTTGTTGAATGCTGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGTTTAT GTGTATTTGTACTCAATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATA CACTTTGATGTTTTGTCTAGGACTGGGAATTCTCTGTGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGA TCTACAGAAACATCAAGTGTGACTAA
Protein sequence (LotjaGi6g1v0362100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDLPLWGYVGELHPDKNSDNGKHVLYTHKNVIVKYNKDQIIHVNLTHEDPKSLEVGRSLDMTYSVKWIPTNITFRRRFD VYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRYL ILLSAVVGIGAQLATLVLLVILLAIVGMLYVGRGTIVTTFIVCYALTSFIAGYVSGGMYSRNGGKNWIKSMILTASLFPF LCFGIGFILNTIAIFYGSLAAIPFGTIVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSV VSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFIILLIVTVCVTIVGTYFLLNAENYHWRWTSFFSAASTAVY VYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 0.0 | ||
| Pfam | 1 | 418 | 418 | 2.5E-143 | ||
| Phobius | 1 | 91 | 91 | - | – | |
| PANTHER | 1 | 461 | 461 | 0.0 | – | |
| SUPERFAMILY | 92 | 292 | 201 | 2.75E-5 | ||
| Phobius | 92 | 115 | 24 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 116 | 159 | 44 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 160 | 190 | 31 | - | – | |
| Phobius | 191 | 195 | 5 | - | – | |
| Phobius | 196 | 219 | 24 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| Phobius | 231 | 256 | 26 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 257 | 261 | 5 | - | – | |
| TMHMM | 259 | 281 | 23 | - | – | |
| Phobius | 262 | 284 | 23 | - | – | |
| Phobius | 285 | 313 | 29 | - | – | |
| Phobius | 314 | 341 | 28 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 342 | 352 | 11 | - | – | |
| Phobius | 353 | 379 | 27 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| Phobius | 380 | 390 | 11 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| Phobius | 391 | 411 | 21 | - | – | |
| Phobius | 412 | 422 | 11 | - | – | |
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 423 | 446 | 24 | - | – | |
| Phobius | 447 | 461 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0362100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…