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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0362100 |
| Transcript ID | LotjaGi6g1v0362100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|V7BVD4|V7BVD4_PHAVU Transmembrane 9 superfamily member; Found in the gene: LotjaGi6g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67406897..67412367) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATCGAACCCATCAATCCAAGGTTGGTTTAAAGTAATTGAGGGTGTAGGAATTTCTGTCTCTCTGGACTTCAGTAA GATATGCTTTGTGTTATGCATGAGCTTCATTTTGTATCTAGAATGTACTTCTAAATGTCTTTAGGCAGTTGTACATGTAC ATAGACACACTTATAATGGTAATGATTTGAATGTGTATATTCTATTTGTAGCTTCCAGTAATGCTATCTCTTTAAAACAT GCATTTCATTTTATTTCAGTATCAACAAGATGACCCGGTTACCCTTTGGGTGAACAAAGTTGGTCCGTATAATAATCCAC AAGAAACATACAACTATTACAGCCTCCCATTTTGCCGTCCACCTGGTAGTGCTGGACACAAATGGGGTGGTCTCGGTGAG GTCCTGGGTGGCAATGAACTCATTGATAGCCAAATTGAGATCAAGTACCTAGGTATGAAGGCTTCTTTGCCCTATACTCC TATTTATTTCATACAAAGGCCTATCTATATACAAAACTGTCTTTAACAAAGATTTTTGTTTTTCCTTTTTTAGTAAATGT GGACAAGACCACCTTTTGCCGTTTGAGTCTCAATGAGGCAAATGTCAAACAGTTCAAAGATGCAATCGAGAATAATTACT GGTTTGAATTCTTCATGGGTATGTTGTGCGTTGTTTATTTCTTTTGCTTATTACTCATAAAATTAATAAAATGATTGTAC TTTTGGAGAATCAATTTTTTTTTAGAAGCTTGCTGTATTTTTTTTTTCTGCATTTGGCCATTGCATAAACTTAAGAGCTG GGGTAAATAATATCCAACCCACAGGATATTGCTCCTTACTCTGTCCTTGATATCCAATCAGCTGCTTTATTTTACAACCT TGGAATAAACTCCAGGGAGATTCCATTGAAAGATGCCAACCGTAGATCTTTTAATTGTGAATTATATGTTACAACAACCT GGAAGATACATGTAGTTCTACATTATTGCTTGAGAGTCTGGGAAGTTATTTTAATGCCAACTGGGAAGGAGAAGCTAGCA ACTGGGGCCTTAGATTAAGTTATTTAATGCATATATTTCTGCTTTTTGTGCTATAGTTTTACTTGAAAGTGATTTGTTAA AGTCCTTTACAAACTTGGCTTATAGCTTCTTTGTTATCGCTGTGGCTTGACCTAGATTATTAGTATTCTTTCCATCAGTG TTATCAAATAGCGGCTATAGCGGCCGCGACCCGCTATAGCGTAGCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGAC ATAGCGGCCACCGCGAGAAACGCAATTGCGGCCGCGACGGCCGTAGCGGCGCTGGAAGCTAAACAGAAATAGCGGATTTT CAGGAATACTGCACGTTTTTTTTTTATTTTTTAGGGTTTTTAAATATGGTAATTCAGTAATTCTTGACTAGTGGGCCACC AACTGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTTTCTTTTTCTGTTTCACTGCTTTACTGCCCAATTAACT CCCCATTAATTATTTTTTTCTATATTTACGCTTCATCATGAAGAATCACGACAGAATTGAAAAGGTTTCCAAAATCCTAA TTCTCCTTCTCTCATCCTCCTTCTACAAGCCCCATTAATTCGTTTTTGTTGCATTTCCTTTTTCTGTTTCACTGTTTTAA GACTTGTGTTTGGTTTATGTTGTTTTAAGTCTTTTGACATTTGATTTGAGCTGGTGGCACCCTTTAATAGTTAAAATTTG GTTGTTAAAAATGATGATTTTATGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTTTTATGCAGTTTTTATTTGTTCA TTTCAAATGTTTCTGCTCTAGTATTGCAATAGATGTCTGATAAGCTGCTTTTTTTTTTTATAATATTTTACTTATTTTAA CCGCTATGTGGTTACCGCTATTTGCTCGTGACGCTATCCGCTAAACGCAATAGCGGATTTTGGCCTCACCGCGATTTTCC GCGATCGCGATTTGACAACACTGCTTTCCATATGTTATTTGTAACCAAGATGATAGGCTTTCAAGAAAAAATTGACAGTC ATACTACATGCTATTTCGTTCATATAAATTGTTGATGTATTTGTGATAAAACTTACATCTTAGACATTGTACAGCATAAA ACACTGAGTTAGAACACTTAGGCCTGGAAGAAGTCCCCTTCTCAATTGGGATCCTTTAATTATGACTACCACTGGTCTCA CCAGGCTGGGTGTTTTGACTTTTCAGATATACATAGTTATCAAAACTGAAAGAAGTATGTAGTTAATAAGTTCTTATTTG AAATCATTGTTTAAGCATTCTTGACTGATATTATAATCACCTGAACTAAAAAACAAGTAAGGGCTGGGATCTAGAAAAGG GTTTGCCCTACTGTGTAGGTCTGTACTAGGTAGCTGTACCTTGCATTTGCAAGAGGCTGATCACATGAACATGTTGCCTC CGGGTCACATGGTAACAGCCCAACCATTGAGCCTAGGCTTCCATTCAAAAGTATGAAGACTATTTGTTTAAGGATATGAT TAAGTAATTTTCAATACCTTAGACTTAACGAGCATTAGAGAATTGATATTATGTGTTCTTGATAGGTATTATGATATGAA TGAGGGTTTGTTCTGTGGGGTGGCCCTTATTGTTTGTTTCCAATTTTCATTTTAATAGCTTTGTTTTAGAAAAAATGCTG AATAACTTACTCTTTGGCATTTTTTCTTTCCTTGGCTGTCATATCTGCTGGTCTTCAATGCGATAAACACAAGTTCAGAT GATCTTCCATTATGGGGTATGCCTATTACTGCCTCTGCCTCGTTCTCTTTATTTCGTGCTCCCTCTCATCCTATTTATAA GATCTTTTCAACTAAATCTCACAAATTAAAGATGTTAAAATTAGATGATGTATTTTTTTATAAATATTCCAGCATTTCCA TGTTTACCACTATTTGATTTCAAACTCTACATTAATCAAAACCTAGGAACTAGAAAGGTTCAAAATTCATGAAGGTCAAA TAAGAAAAAAATGCTTCTGAAACTTTTTGAAGTGTTTTATATTAAGGACCATCAAAAGTTTTACGAAGGGGTCTTATAAA AAAGACAGGAGGGAGCGTGACTTCGCATTTCATTTGTTGATCATTATTGAAGGTTCTTTTTATGTTTAAGGGTATGTTGG CGAGCTACATCCTGATAAAAACAGTGACAATGGAAAGCATGTCCTTTACACACACAAGAACGTCATTGTTAAATACAATA AGGATCAGGTAAGAAGTTAATTAAATCTCCCTGATCTTATGAGCTGTTTTGGGTGTGAGAAGTTCCTTACTTAGTTCTGT TTACTTGCAGATCATTCATGTGAATCTTACTCATGAAGACCCAAAGTCTTTGGAAGTAGGAAGATCTTTGGACATGACAT ATTCCGTCAAATGGATTCCTACTAATATCACTTTCAGACGCCGATTTGATGTATATCTAGACTATCCGTTCTTTGAGCAT CAGGTGAAAATTAATGCTGCCAGCTCTGTATCTTAGATTGAAGTGGTGTTTATCATTGATTACCTGCTATGCATTTAATT TTGTGGCCATGTCAGTGAGAAAACTTTGCTCCTTTGGCTTCTGTAGATTCATTGGTTCTCCATTTTCAACTCTTTCATGA TGGTCATCTTTCTAACTGGATTGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTCGGGAA GATGATGATTTGGAAACTTTGGTGAGGCTTTGTTGACTTTGTCTGTAATTTATTTTATTTGTAGAATATCCATTCCTCTT TCATGGAAAATTCATTTGGTCAATTGTCAAACTTTCAGGAAAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCAT GGTGATGTTTTTAGGCCTCCTCGCTATTTGATTCTTCTTTCAGCAGTTGTTGGCATAGGTGCTCAGCTTGCAACGCTGGT TCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGCTGTATGTTGGGTAAGTGCATTACTAATTATAATGTTACTCTGAAT AATGGTTTTATTGAGATAGTGTGATTGTGCACAAAATAGACTTAATGCAATACACATTTGTTATTTTCTTCTCATATATC ACTAGTCACAACTATTGTTGTCTAGCTTTCCTATTGACCATATTTTGTTTGCCCATTTTGTTTCCCCCTTCCTTATTATG TGAATTTCCTTAAATGTGCAGGCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCATTGCTG GTTATGTGAGTGGGGGGATGTACTCGCGAAATGGGGGTAAGAGTTTGCACAGAATATTGTTGCATGCTCTTTCAAGTTTG TTTTGGTGGCTGTCTCTCTCTCTCTCTCTCTCTTTGAACAATTATAACCATGCTTATCTTTTTCAGGTAAAAATTGGATT AAATCCATGATTCTCACAGCTTCACTGTTCCCATTCTTGTGCTTTGGAATTGGATTTATCTTAAACACAATTGCTATATT CTATGGATCTCTAGCAGCCATCCCCTTTGGTACAATAGTTGTTGTCTTTGTTATATGGGCTTTTATCTCTTTCCCTCTAG CACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTGGCGCTCCAAATAATCCCTGTCGTGTAAAGACCATTCCTCGTCCC ATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTCTATGATGGGAGGATTGCTTCCCTTTGGCAGCATATTCAT TGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGAGTTACAAAGCCATGACTTATTTGTGCAGAAAGAAAG ATTTTTCTTATGGGTCTGGTAGGTTACTTTCACTTTATCAGAGCAAAGCAAACAATAATTTCTTGTGGAAATGTTTTAAA TAGAAACTCTTGTATTCCTGTGAAATAAACACATGTGCTTGTCTTACATTTTTTTGTTTCCTCTTCTGCTTTTTGACAAA CAGGTGTACTATGTCTATGGCTTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATCGTGGG GACATACTTTTTGTTGAATGCTGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGTTTATG TGTATTTGTACTCAATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATAC ACTTTGATGTTTTGTCTAGGACTGGGAATTCTCTGTGGTAAGTCTTCAATTTAATTTTAATCTCTGTTAGGATCACGCAC ACATTCTACAGAAGTGAAACCCTATTTTTCTTCAAACTTGCAGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAG GAGGATCTACAGAAACATCAAGTGTGACTAA
CDS sequence (LotjaGi6g1v0362100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTCATTTTATTTCAGTATCAACAAGATGACCCGGTTACCCTTTGGGTGAACAAAGTTGGTCCGTATAATAATCC ACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCGTCCACCTGGTAGTGCTGGACACAAATGGGGTGGTCTCGGTG AGGTCCTGGGTGGCAATGAACTCATTGATAGCCAAATTGAGATCAAGTACCTAGTAAATGTGGACAAGACCACCTTTTGC CGTTTGAGTCTCAATGAGGCAAATGTCAAACAGTTCAAAGATGCAATCGAGAATAATTACTGGTTTGAATTCTTCATGGA TGATCTTCCATTATGGGGGTATGTTGGCGAGCTACATCCTGATAAAAACAGTGACAATGGAAAGCATGTCCTTTACACAC ACAAGAACGTCATTGTTAAATACAATAAGGATCAGATCATTCATGTGAATCTTACTCATGAAGACCCAAAGTCTTTGGAA GTAGGAAGATCTTTGGACATGACATATTCCGTCAAATGGATTCCTACTAATATCACTTTCAGACGCCGATTTGATGTATA TCTAGACTATCCGTTCTTTGAGCATCAGATTCATTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTTCTAACTG GATTGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTCGGGAAGATGATGATTTGGAAACT TTGGAAAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTAGGCCTCCTCGCTATTTGATTCT TCTTTCAGCAGTTGTTGGCATAGGTGCTCAGCTTGCAACGCTGGTTCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGC TGTATGTTGGGCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCATTGCTGGTTATGTGAGT GGGGGGATGTACTCGCGAAATGGGGGTAAAAATTGGATTAAATCCATGATTCTCACAGCTTCACTGTTCCCATTCTTGTG CTTTGGAATTGGATTTATCTTAAACACAATTGCTATATTCTATGGATCTCTAGCAGCCATCCCCTTTGGTACAATAGTTG TTGTCTTTGTTATATGGGCTTTTATCTCTTTCCCTCTAGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTGGCGCT CCAAATAATCCCTGTCGTGTAAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTC TATGATGGGAGGATTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGG TGTACTATGTCTATGGCTTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATCGTGGGGACA TACTTTTTGTTGAATGCTGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGTTTATGTGTA TTTGTACTCAATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTT TGATGTTTTGTCTAGGACTGGGAATTCTCTGTGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTAC AGAAACATCAAGTGTGACTAA
Protein sequence (LotjaGi6g1v0362100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFILFQYQQDDPVTLWVNKVGPYNNPQETYNYYSLPFCRPPGSAGHKWGGLGEVLGGNELIDSQIEIKYLVNVDKTTFC RLSLNEANVKQFKDAIENNYWFEFFMDDLPLWGYVGELHPDKNSDNGKHVLYTHKNVIVKYNKDQIIHVNLTHEDPKSLE VGRSLDMTYSVKWIPTNITFRRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLET LERDVSEESGWKLVHGDVFRPPRYLILLSAVVGIGAQLATLVLLVILLAIVGMLYVGRGTIVTTFIVCYALTSFIAGYVS GGMYSRNGGKNWIKSMILTASLFPFLCFGIGFILNTIAIFYGSLAAIPFGTIVVVFVIWAFISFPLALLGTVVGRNWSGA PNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFIILLIVTVCVTIVGT YFLLNAENYHWRWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIY RNIKCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 196 | 196 | - | – | |
| PANTHER | 6 | 566 | 561 | 0.0 | ||
| PANTHER | 6 | 566 | 561 | 0.0 | – | |
| Pfam | 31 | 523 | 493 | 1.8E-166 | ||
| SUPERFAMILY | 197 | 397 | 201 | 4.58E-5 | ||
| Phobius | 197 | 220 | 24 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 221 | 264 | 44 | - | – | |
| TMHMM | 265 | 287 | 23 | - | – | |
| Phobius | 265 | 295 | 31 | - | – | |
| Phobius | 296 | 300 | 5 | - | – | |
| Phobius | 301 | 324 | 24 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| Phobius | 325 | 335 | 11 | - | – | |
| Phobius | 336 | 361 | 26 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 362 | 366 | 5 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 367 | 389 | 23 | - | – | |
| Phobius | 390 | 418 | 29 | - | – | |
| Phobius | 419 | 446 | 28 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 447 | 457 | 11 | - | – | |
| Phobius | 458 | 484 | 27 | - | – | |
| TMHMM | 462 | 484 | 23 | - | – | |
| Phobius | 485 | 495 | 11 | - | – | |
| TMHMM | 491 | 513 | 23 | - | – | |
| Phobius | 496 | 516 | 21 | - | – | |
| Phobius | 517 | 527 | 11 | - | – | |
| Phobius | 528 | 551 | 24 | - | – | |
| TMHMM | 528 | 550 | 23 | - | – | |
| Phobius | 552 | 566 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0362100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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