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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0362100 |
| Transcript ID | LotjaGi6g1v0362100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|V7BVD4|V7BVD4_PHAVU Transmembrane 9 superfamily member; Found in the gene: LotjaGi6g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67407078..67412367) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTTGAATGTGTATATTCTATTTGTAGCTTCCAGTAATGCTATCTCTTTAAAACATGCATTTCATTTTATTTCAGTA TCAACAAGATGACCCGGTTACCCTTTGGGTGAACAAAGTTGGTCCGTATAATAATCCACAAGAAACATACAACTATTACA GCCTCCCATTTTGCCGTCCACCTGGTAGTGCTGGACACAAATGGGGTGGTCTCGGTGAGGTCCTGGGTGGCAATGAACTC ATTGATAGCCAAATTGAGATCAAGTACCTAGGTATGAAGGCTTCTTTGCCCTATACTCCTATTTATTTCATACAAAGGCC TATCTATATACAAAACTGTCTTTAACAAAGATTTTTGTTTTTCCTTTTTTAGTAAATGTGGACAAGACCACCTTTTGCCG TTTGAGTCTCAATGAGGCAAATGTCAAACAGTTCAAAGATGCAATCGAGAATAATTACTGGTTTGAATTCTTCATGGGTA TGTTGTGCGTTGTTTATTTCTTTTGCTTATTACTCATAAAATTAATAAAATGATTGTACTTTTGGAGAATCAATTTTTTT TTAGAAGCTTGCTGTATTTTTTTTTTCTGCATTTGGCCATTGCATAAACTTAAGAGCTGGGGTAAATAATATCCAACCCA CAGGATATTGCTCCTTACTCTGTCCTTGATATCCAATCAGCTGCTTTATTTTACAACCTTGGAATAAACTCCAGGGAGAT TCCATTGAAAGATGCCAACCGTAGATCTTTTAATTGTGAATTATATGTTACAACAACCTGGAAGATACATGTAGTTCTAC ATTATTGCTTGAGAGTCTGGGAAGTTATTTTAATGCCAACTGGGAAGGAGAAGCTAGCAACTGGGGCCTTAGATTAAGTT ATTTAATGCATATATTTCTGCTTTTTGTGCTATAGTTTTACTTGAAAGTGATTTGTTAAAGTCCTTTACAAACTTGGCTT ATAGCTTCTTTGTTATCGCTGTGGCTTGACCTAGATTATTAGTATTCTTTCCATCAGTGTTATCAAATAGCGGCTATAGC GGCCGCGACCCGCTATAGCGTAGCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGACATAGCGGCCACCGCGAGAAAC GCAATTGCGGCCGCGACGGCCGTAGCGGCGCTGGAAGCTAAACAGAAATAGCGGATTTTCAGGAATACTGCACGTTTTTT TTTTATTTTTTAGGGTTTTTAAATATGGTAATTCAGTAATTCTTGACTAGTGGGCCACCAACTGCCCAATTAACTCCCCA TTAATTCGTTTTTGTTGCATTTTCTTTTTCTGTTTCACTGCTTTACTGCCCAATTAACTCCCCATTAATTATTTTTTTCT ATATTTACGCTTCATCATGAAGAATCACGACAGAATTGAAAAGGTTTCCAAAATCCTAATTCTCCTTCTCTCATCCTCCT TCTACAAGCCCCATTAATTCGTTTTTGTTGCATTTCCTTTTTCTGTTTCACTGTTTTAAGACTTGTGTTTGGTTTATGTT GTTTTAAGTCTTTTGACATTTGATTTGAGCTGGTGGCACCCTTTAATAGTTAAAATTTGGTTGTTAAAAATGATGATTTT ATGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTTTTATGCAGTTTTTATTTGTTCATTTCAAATGTTTCTGCTCTAG TATTGCAATAGATGTCTGATAAGCTGCTTTTTTTTTTTATAATATTTTACTTATTTTAACCGCTATGTGGTTACCGCTAT TTGCTCGTGACGCTATCCGCTAAACGCAATAGCGGATTTTGGCCTCACCGCGATTTTCCGCGATCGCGATTTGACAACAC TGCTTTCCATATGTTATTTGTAACCAAGATGATAGGCTTTCAAGAAAAAATTGACAGTCATACTACATGCTATTTCGTTC ATATAAATTGTTGATGTATTTGTGATAAAACTTACATCTTAGACATTGTACAGCATAAAACACTGAGTTAGAACACTTAG GCCTGGAAGAAGTCCCCTTCTCAATTGGGATCCTTTAATTATGACTACCACTGGTCTCACCAGGCTGGGTGTTTTGACTT TTCAGATATACATAGTTATCAAAACTGAAAGAAGTATGTAGTTAATAAGTTCTTATTTGAAATCATTGTTTAAGCATTCT TGACTGATATTATAATCACCTGAACTAAAAAACAAGTAAGGGCTGGGATCTAGAAAAGGGTTTGCCCTACTGTGTAGGTC TGTACTAGGTAGCTGTACCTTGCATTTGCAAGAGGCTGATCACATGAACATGTTGCCTCCGGGTCACATGGTAACAGCCC AACCATTGAGCCTAGGCTTCCATTCAAAAGTATGAAGACTATTTGTTTAAGGATATGATTAAGTAATTTTCAATACCTTA GACTTAACGAGCATTAGAGAATTGATATTATGTGTTCTTGATAGGTATTATGATATGAATGAGGGTTTGTTCTGTGGGGT GGCCCTTATTGTTTGTTTCCAATTTTCATTTTAATAGCTTTGTTTTAGAAAAAATGCTGAATAACTTACTCTTTGGCATT TTTTCTTTCCTTGGCTGTCATATCTGCTGGTCTTCAATGCGATAAACACAAGTTCAGATGATCTTCCATTATGGGGTATG CCTATTACTGCCTCTGCCTCGTTCTCTTTATTTCGTGCTCCCTCTCATCCTATTTATAAGATCTTTTCAACTAAATCTCA CAAATTAAAGATGTTAAAATTAGATGATGTATTTTTTTATAAATATTCCAGCATTTCCATGTTTACCACTATTTGATTTC AAACTCTACATTAATCAAAACCTAGGAACTAGAAAGGTTCAAAATTCATGAAGGTCAAATAAGAAAAAAATGCTTCTGAA ACTTTTTGAAGTGTTTTATATTAAGGACCATCAAAAGTTTTACGAAGGGGTCTTATAAAAAAGACAGGAGGGAGCGTGAC TTCGCATTTCATTTGTTGATCATTATTGAAGGTTCTTTTTATGTTTAAGGGTATGTTGGCGAGCTACATCCTGATAAAAA CAGTGACAATGGAAAGCATGTCCTTTACACACACAAGAACGTCATTGTTAAATACAATAAGGATCAGGTAAGAAGTTAAT TAAATCTCCCTGATCTTATGAGCTGTTTTGGGTGTGAGAAGTTCCTTACTTAGTTCTGTTTACTTGCAGATCATTCATGT GAATCTTACTCATGAAGACCCAAAGTCTTTGGAAGTAGGAAGATCTTTGGACATGACATATTCCGTCAAATGGATTCCTA CTAATATCACTTTCAGACGCCGATTTGATGTATATCTAGACTATCCGTTCTTTGAGCATCAGGTGAAAATTAATGCTGCC AGCTCTGTATCTTAGATTGAAGTGGTGTTTATCATTGATTACCTGCTATGCATTTAATTTTGTGGCCATGTCAGTGAGAA AACTTTGCTCCTTTGGCTTCTGTAGATTCATTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTTCTAACTGGAT TGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTCGGGAAGATGATGATTTGGAAACTTTG GTGAGGCTTTGTTGACTTTGTCTGTAATTTATTTTATTTGTAGAATATCCATTCCTCTTTCATGGAAAATTCATTTGGTC AATTGTCAAACTTTCAGGAAAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTAGGCCTCCT CGCTATTTGATTCTTCTTTCAGCAGTTGTTGGCATAGGTGCTCAGCTTGCAACGCTGGTTCTTCTTGTCATCTTGTTAGC TATTGTTGGGATGCTGTATGTTGGGTAAGTGCATTACTAATTATAATGTTACTCTGAATAATGGTTTTATTGAGATAGTG TGATTGTGCACAAAATAGACTTAATGCAATACACATTTGTTATTTTCTTCTCATATATCACTAGTCACAACTATTGTTGT CTAGCTTTCCTATTGACCATATTTTGTTTGCCCATTTTGTTTCCCCCTTCCTTATTATGTGAATTTCCTTAAATGTGCAG GCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCATTGCTGGTTATGTGAGTGGGGGGATGT ACTCGCGAAATGGGGGTAAGAGTTTGCACAGAATATTGTTGCATGCTCTTTCAAGTTTGTTTTGGTGGCTGTCTCTCTCT CTCTCTCTCTCTTTGAACAATTATAACCATGCTTATCTTTTTCAGGTAAAAATTGGATTAAATCCATGATTCTCACAGCT TCACTGTTCCCATTCTTGTGCTTTGGAATTGGATTTATCTTAAACACAATTGCTATATTCTATGGATCTCTAGCAGCCAT CCCCTTTGGTACAATAGTTGTTGTCTTTGTTATATGGGCTTTTATCTCTTTCCCTCTAGCACTTCTTGGCACAGTTGTTG GAAGAAACTGGAGTGGCGCTCCAAATAATCCCTGTCGTGTAAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTAC CTCACACCCTCTGTAGTTTCTATGATGGGAGGATTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTAC TTCCTTCTGGAATTACAAGGTGAGTTACAAAGCCATGACTTATTTGTGCAGAAAGAAAGATTTTTCTTATGGGTCTGGTA GGTTACTTTCACTTTATCAGAGCAAAGCAAACAATAATTTCTTGTGGAAATGTTTTAAATAGAAACTCTTGTATTCCTGT GAAATAAACACATGTGCTTGTCTTACATTTTTTTGTTTCCTCTTCTGCTTTTTGACAAACAGGTGTACTATGTCTATGGC TTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATCGTGGGGACATACTTTTTGTTGAATGC TGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGTTTATGTGTATTTGTACTCAATATACT ACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTAGGA CTGGGAATTCTCTGTGGTAAGTCTTCAATTTAATTTTAATCTCTGTTAGGATCACGCACACATTCTACAGAAGTGAAACC CTATTTTTCTTCAAACTTGCAGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAAACATCAA GTGTGACTAA
CDS sequence (LotjaGi6g1v0362100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTCATTTTATTTCAGTATCAACAAGATGACCCGGTTACCCTTTGGGTGAACAAAGTTGGTCCGTATAATAATCC ACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCGTCCACCTGGTAGTGCTGGACACAAATGGGGTGGTCTCGGTG AGGTCCTGGGTGGCAATGAACTCATTGATAGCCAAATTGAGATCAAGTACCTAGTAAATGTGGACAAGACCACCTTTTGC CGTTTGAGTCTCAATGAGGCAAATGTCAAACAGTTCAAAGATGCAATCGAGAATAATTACTGGTTTGAATTCTTCATGGA TGATCTTCCATTATGGGGGTATGTTGGCGAGCTACATCCTGATAAAAACAGTGACAATGGAAAGCATGTCCTTTACACAC ACAAGAACGTCATTGTTAAATACAATAAGGATCAGATCATTCATGTGAATCTTACTCATGAAGACCCAAAGTCTTTGGAA GTAGGAAGATCTTTGGACATGACATATTCCGTCAAATGGATTCCTACTAATATCACTTTCAGACGCCGATTTGATGTATA TCTAGACTATCCGTTCTTTGAGCATCAGATTCATTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTTCTAACTG GATTGGTGTCAATGATATTAATGCGGACTTTGAGAAATGACTATGCTAAGTATGCTCGGGAAGATGATGATTTAGAAAGA GATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTAGGCCTCCTCGCTATTTGATTCTTCTTTCAGC AGTTGTTGGCATAGGTGCTCAGCTTGCAACGCTGGTTCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGCTGTATGTTG GGCGAGGAACCATTGTCACAACCTTCATTGTATGTTATGCTCTCACGTCATTCATTGCTGGTTATGTGAGTGGGGGGATG TACTCGCGAAATGGGGGTAAAAATTGGATTAAATCCATGATTCTCACAGCTTCACTGTTCCCATTCTTGTGCTTTGGAAT TGGATTTATCTTAAACACAATTGCTATATTCTATGGATCTCTAGCAGCCATCCCCTTTGGTACAATAGTTGTTGTCTTTG TTATATGGGCTTTTATCTCTTTCCCTCTAGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTGGCGCTCCAAATAAT CCCTGTCGTGTAAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTCTATGATGGG AGGATTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATG TCTATGGCTTCATGCTACTGGTTTTTATAATTCTTCTCATTGTTACCGTATGTGTGACAATCGTGGGGACATACTTTTTG TTGAATGCTGAGAACTACCACTGGCGATGGACTTCTTTCTTTTCAGCTGCCTCAACAGCAGTTTATGTGTATTTGTACTC AATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTT GTCTAGGACTGGGAATTCTCTGTGGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAAACATC AAGTGTGACTAA
Protein sequence (LotjaGi6g1v0362100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFILFQYQQDDPVTLWVNKVGPYNNPQETYNYYSLPFCRPPGSAGHKWGGLGEVLGGNELIDSQIEIKYLVNVDKTTFC RLSLNEANVKQFKDAIENNYWFEFFMDDLPLWGYVGELHPDKNSDNGKHVLYTHKNVIVKYNKDQIIHVNLTHEDPKSLE VGRSLDMTYSVKWIPTNITFRRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLER DVSEESGWKLVHGDVFRPPRYLILLSAVVGIGAQLATLVLLVILLAIVGMLYVGRGTIVTTFIVCYALTSFIAGYVSGGM YSRNGGKNWIKSMILTASLFPFLCFGIGFILNTIAIFYGSLAAIPFGTIVVVFVIWAFISFPLALLGTVVGRNWSGAPNN PCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFIILLIVTVCVTIVGTYFL LNAENYHWRWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNI KCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 196 | 196 | - | – | |
| PANTHER | 6 | 563 | 558 | 0.0 | – | |
| PANTHER | 6 | 563 | 558 | 0.0 | ||
| Pfam | 31 | 520 | 490 | 8.9E-167 | ||
| SUPERFAMILY | 197 | 394 | 198 | 7.06E-5 | ||
| Phobius | 197 | 220 | 24 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 221 | 261 | 41 | - | – | |
| Coils | 221 | 241 | 21 | - | – | |
| Phobius | 262 | 292 | 31 | - | – | |
| TMHMM | 262 | 284 | 23 | - | – | |
| Phobius | 293 | 297 | 5 | - | – | |
| Phobius | 298 | 321 | 24 | - | – | |
| TMHMM | 299 | 321 | 23 | - | – | |
| Phobius | 322 | 332 | 11 | - | – | |
| Phobius | 333 | 358 | 26 | - | – | |
| TMHMM | 334 | 356 | 23 | - | – | |
| Phobius | 359 | 363 | 5 | - | – | |
| TMHMM | 361 | 383 | 23 | - | – | |
| Phobius | 364 | 386 | 23 | - | – | |
| Phobius | 387 | 415 | 29 | - | – | |
| Phobius | 416 | 443 | 28 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 444 | 454 | 11 | - | – | |
| Phobius | 455 | 481 | 27 | - | – | |
| TMHMM | 459 | 481 | 23 | - | – | |
| Phobius | 482 | 492 | 11 | - | – | |
| TMHMM | 488 | 510 | 23 | - | – | |
| Phobius | 493 | 513 | 21 | - | – | |
| Phobius | 514 | 524 | 11 | - | – | |
| Phobius | 525 | 548 | 24 | - | – | |
| TMHMM | 525 | 547 | 23 | - | – | |
| Phobius | 549 | 563 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0362100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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