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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0363000 |
| Transcript ID | LotjaGi6g1v0363000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G80470.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9M8L5|FDL13_ARATH F-box/FBD/LRR-repeat protein At1g80470; TrEMBL-Plants: tr|K7KYU1|K7KYU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0363000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67450183..67453330) extracted from Lotus japonicus Gifu genome v1.2.
CCCTAAAGTTATGGTCTATTGTATAGGATAAATTTCAACAGTATAAAGTCTGATAGGCGAATAATTATTTGATATAATTC CTTTAATTTTCTGTGTTGATTATGTAATTAGTTTATATTCTAAAAAGAGTGTATGGGTGAGGGTTAAGAGAGAGAGAGAG AGAGCAGAAATGGCGATGGAAGATGGAATGAACGAAGTACCAGATGAAATAGTTGAACACATTCTTTCATATGTGGAGAC GAAGGATGCAATGCAATGCAGTGTTCTCAGCAAAAGATGGAGGTCTCTTTGGCGTGCTCTTCCCGTTCTCAACTTCGATA GCGCCTCTTTCACTCACTACTCTTCCTTCGCTAATTTCGTTCTCCATGTTCTTCACTCTTCCACCTCTCTCACCCTCACC CACTGCAAATTCTGGTTCGACATCTCTAACCCTATCTTCTGCTGTCTTCAAATCTGCATCGATCGCCAAGATCTCTGTGA GGGTCTTGTCAGAATGTTCATCCACCACGTAACTACCCATGGCGTCCAGCATCTCACCCTCTTGTTCCCGCGTATTGTTG ATGATTTGCCCCTTCTTTTCTCTTGCCAATCCTTGCAACACCTTCAACTCTTCGAGCTCATCATTCTTCCCGATTGCTGG GGTTTCGCCTCCCTCACCACTCTGCATCTTGTTCGCTGCTCCTTCATGGTCGATTGGGATTACGGGGTCGGGGACCTTCA AAGTTACGATTCTAGTGATGGTTCCTTCGACCCTTTTGAGAATTTTGTGAATTTGACCCATTTGTTGATATCTGATTGCC GATTCCCATCTAAAGTTCGAATCTTAGATATACGTGCTCCTCACCTCACTAACCTTACAATATCCAGTATGGAACACGTT CGAAACATATGCCCGGATTGTAAGATCATTGTCGCTTCCCCGACACTTACAACCTTCAATTTTGTTGACTCCCATGTTCT GCAGCTCTTCCTTGTTGGCTCTTGCTCCATTGAGAGGGCTCATCTTGATGTTGCTGTTACTGGTTACCAAGTACCAAAAC ATGATTTCATTTCTCGTTTGATTGACATGTTTTGGGCGATTGGGGATGCCAAGGATGTCACATTATCTTTTCAAACTATA AGTGTAAGTATAATCTAGCTGCCTTGCTTATCTGTAGAACAAAGTTATTGCTTGTCATTGTCAATCTCAGATAGATTTAT TGTTGTTTTCTTTGCCTGGTTGCTCAGATTCTTTCCCAGTTCCCTGCTGAATTGCGCCATCCTTGTCCTTTTACTGGAAT GCAAATTTTGAGAGTGAAAGTGCTAAATGAATCATGCTCCACCACCATGTCCATACCTGTTGAGGTCTTAAACTTCTTGT TGCAAGGATCTCCTACCAAAACTTTCAAGGTGGAGGCCATAAAGGTATTTTTTTTTTATCAGCAGGAATTTGTTTTAAAT TTATGCATATTTGGCAAAAACGATTCTCGTTCTAGTTTCAAAACTTTTTCTTCTTTTTACTTTTTATATTGGCTCTCTTG ATATTATTTAGCTTAGCAATTACCTATTCAAGTAGCCAACTTTGGCAAAATTATTAACTACCTCCAGTTAGATTAGTATT TACCTTGTGATGTCTTGTCTATGTGATTGTGTGTAGAATGTGGATCTAATTAGTCATTTCTGTGGCATTGCCAAATTCAC TGGTTTATTTTGTGCTTTTGTTATAGCAAATGGCAAGGAGTAGCATTGGAGGGAATTGACTGCTGATTTTTACAAATTTA AAAGGTAAAATACGCTTGTGTCTTAGCACTTCATATTTGTGTATCTATTCCTCTGTTGAAATCAAAGCACCTAGTATACT CTAAGGACTGATTTTTAATTGAATCAACTAGTTACCAAACTGCTACGTAGGTTTCAATTAAGTCGAATGTAATACAGGTA ATATTTAACCTTCATCAGGCCATTCTCAATGTTAATGCAGTCTATTATGATTCTATTTGTCTTCAAATGTCTTGCTTACC CTACCTTGCTTTAAGTATTCTTGTGCATACCTTGTATCTAGGAAGGATGTGTTACGCACGAAGGTATCATAGATGGGGCA ATTGAATTCTTCACAGTCTGCTTAGTGTAGACAATGGTTACTTGGTTAGTTAAATAAGGACAGATAAGGGTTAAGAAAAC TTCATTTGTTGGGTGATATTGGGCATGGAAAAAAAAGTCATGATATTTCATTCCAAGTGAGAAGTGGGATTGCTTAAATG TTATAATGGCTCAGAGAGTAATAGCCAAAATATTATCATTGATAGGCACCCTTAAAACTAATTTTACCTATTTACTGATA GGTTTATTCTTAACTTATTTGTTTGTGTTGCAAACAATACGTAAAGAATCATGTTAATTTGACAAAGATGTCATCTTGTG TGTTTCTTTCATGTATCTCAAATTTTCAATAATACAAGTAAGCTGTGTAGACAAGTTTTTGCGCAATGTTATGTTTGCCG AACTTATTGGATTGAAATGCATACTCTATTTTAGTGCTTGACGGTTTAGTTTTGGTTGTTGATGTTGATATAATTTGTCC TTGTAGGTGGCAAGGCACTGCATGTGTGTTTGATTATTAAGAAGAGACAAATCCATGTTTCCTCATTTTGGTGATTAGAT GGGTTTGGTTGTGAATGTGTTCCATAAGCTGGTTTTAAGAAGGTTGTTCAATCAAGTATAGGTGGAAGAATTGGTGAAGA AATACTTTGGTCGCCACACTAAAAAGAAAACTAGTTTAAACATCATCTTGATCTGTAGTTTTAGTGTTTCAGTAAAACTA TGATTATGCAGTTATTGTTAAACAATTATTGGTACTGGGACTTGGTGAAAGCTGTGAGGATTGAATTATATGGTATCATG ATTTTCCCTATAAGTTGTAATGTGCAAACACCTCCAAGTTGCACTTGATAGTTCATTCTTTTTTTTCATATTGAAGGATA ATTAGATTAAAGTCACAAGGGAAGGGAAACGACACTTATAGTATGTAAATAGAGGATAAACTCAATATGAGCAGTACAAA AGAGCAATATTTTGGTGGGTTGAATGAGATATTGGAGAAAGTGAAGATGAGGGCGATGGTTGTTTTTTTGTTGCATTGAC CAAGTGACTTTGGCAAAACCAAACTGGC
CDS sequence (LotjaGi6g1v0363000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATGGAAGATGGAATGAACGAAGTACCAGATGAAATAGTTGAACACATTCTTTCATATGTGGAGACGAAGGATGC AATGCAATGCAGTGTTCTCAGCAAAAGATGGAGGTCTCTTTGGCGTGCTCTTCCCGTTCTCAACTTCGATAGCGCCTCTT TCACTCACTACTCTTCCTTCGCTAATTTCGTTCTCCATGTTCTTCACTCTTCCACCTCTCTCACCCTCACCCACTGCAAA TTCTGGTTCGACATCTCTAACCCTATCTTCTGCTGTCTTCAAATCTGCATCGATCGCCAAGATCTCTGTGAGGGTCTTGT CAGAATGTTCATCCACCACGTAACTACCCATGGCGTCCAGCATCTCACCCTCTTGTTCCCGCGTATTGTTGATGATTTGC CCCTTCTTTTCTCTTGCCAATCCTTGCAACACCTTCAACTCTTCGAGCTCATCATTCTTCCCGATTGCTGGGGTTTCGCC TCCCTCACCACTCTGCATCTTGTTCGCTGCTCCTTCATGGTCGATTGGGATTACGGGGTCGGGGACCTTCAAAGTTACGA TTCTAGTGATGGTTCCTTCGACCCTTTTGAGAATTTTGTGAATTTGACCCATTTGTTGATATCTGATTGCCGATTCCCAT CTAAAGTTCGAATCTTAGATATACGTGCTCCTCACCTCACTAACCTTACAATATCCAGTATGGAACACGTTCGAAACATA TGCCCGGATTGTAAGATCATTGTCGCTTCCCCGACACTTACAACCTTCAATTTTGTTGACTCCCATGTTCTGCAGCTCTT CCTTGTTGGCTCTTGCTCCATTGAGAGGGCTCATCTTGATGTTGCTGTTACTGGTTACCAAGTACCAAAACATGATTTCA TTTCTCGTTTGATTGACATGTTTTGGGCGATTGGGGATGCCAAGGATGTCACATTATCTTTTCAAACTATAAGTATTCTT TCCCAGTTCCCTGCTGAATTGCGCCATCCTTGTCCTTTTACTGGAATGCAAATTTTGAGAGTGAAAGTGCTAAATGAATC ATGCTCCACCACCATGTCCATACCTGTTGAGGTCTTAAACTTCTTGTTGCAAGGATCTCCTACCAAAACTTTCAAGGTGG AGGCCATAAAGCAAATGGCAAGGAGTAGCATTGGAGGGAATTGA
Protein sequence (LotjaGi6g1v0363000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMEDGMNEVPDEIVEHILSYVETKDAMQCSVLSKRWRSLWRALPVLNFDSASFTHYSSFANFVLHVLHSSTSLTLTHCK FWFDISNPIFCCLQICIDRQDLCEGLVRMFIHHVTTHGVQHLTLLFPRIVDDLPLLFSCQSLQHLQLFELIILPDCWGFA SLTTLHLVRCSFMVDWDYGVGDLQSYDSSDGSFDPFENFVNLTHLLISDCRFPSKVRILDIRAPHLTNLTISSMEHVRNI CPDCKIIVASPTLTTFNFVDSHVLQLFLVGSCSIERAHLDVAVTGYQVPKHDFISRLIDMFWAIGDAKDVTLSFQTISIL SQFPAELRHPCPFTGMQILRVKVLNESCSTTMSIPVEVLNFLLQGSPTKTFKVEAIKQMARSSIGGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 277 | 274 | 2.1E-31 | – | |
| PANTHER | 4 | 277 | 274 | 2.1E-31 | – | |
| ProSiteProfiles | 4 | 52 | 49 | 10.16 | ||
| SUPERFAMILY | 5 | 47 | 43 | 3.66E-12 | ||
| Gene3D | 6 | 280 | 275 | 1.1E-20 | ||
| Pfam | 9 | 43 | 35 | 2.2E-9 | ||
| SMART | 10 | 50 | 41 | 1.3E-7 | ||
| SUPERFAMILY | 40 | 273 | 234 | 1.13E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0363000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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