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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0023469 |
| Transcript ID | Lj0g3v0023469.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g14470-like [Glycine max] gi|356498922|ref|XP_003518295.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 447 | 442 | 0 | – | |
| PANTHER | 6 | 447 | 442 | 0 | – | |
| Pfam | 7 | 35 | 29 | 1.90E-05 | ||
| ProSiteProfiles | 8 | 38 | 31 | 10.03 | ||
| TIGRFAM | 10 | 41 | 32 | 1.10E-04 | ||
| ProSiteProfiles | 39 | 73 | 35 | 11.52 | ||
| Pfam | 39 | 85 | 47 | 2.20E-11 | ||
| TIGRFAM | 41 | 75 | 35 | 1.00E-05 | ||
| ProSiteProfiles | 74 | 108 | 35 | 7.399 | ||
| Gene3D | 108 | 204 | 97 | 1.10E-05 | ||
| ProSiteProfiles | 109 | 139 | 31 | 5.974 | ||
| Pfam | 114 | 135 | 22 | 0.53 | ||
| ProSiteProfiles | 141 | 175 | 35 | 10.753 | ||
| Pfam | 143 | 171 | 29 | 3.70E-07 | ||
| TIGRFAM | 143 | 172 | 30 | 9.20E-07 | ||
| Pfam | 172 | 219 | 48 | 3.70E-10 | ||
| TIGRFAM | 174 | 208 | 35 | 3.80E-07 | ||
| ProSiteProfiles | 176 | 206 | 31 | 7.015 | ||
| ProSiteProfiles | 243 | 273 | 31 | 8.769 | ||
| TIGRFAM | 247 | 275 | 29 | 9.40E-04 | ||
| Pfam | 247 | 273 | 27 | 4.50E-05 | ||
| ProSiteProfiles | 274 | 308 | 35 | 11.805 | ||
| Pfam | 274 | 321 | 48 | 3.10E-11 | ||
| TIGRFAM | 276 | 309 | 34 | 1.00E-07 | ||
| ProSiteProfiles | 309 | 339 | 31 | 7.081 | ||
| Gene3D | 339 | 425 | 87 | 1.10E-05 | ||
| ProSiteProfiles | 340 | 370 | 31 | 8.681 | ||
| Pfam | 344 | 368 | 25 | 0.0014 | ||
| TIGRFAM | 344 | 367 | 24 | 3.30E-04 | ||
| ProSiteProfiles | 406 | 440 | 35 | 7.607 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0023469.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0023469.1, powered by CORGI.
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