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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF12854
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 471 results. Now displaying 1 of 10 with 50 rows per page. This search has taken 0.120s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000719.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 312103 314781 +
2 domain predictions
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Lj0g3v0002149.1
n.a. n.a. chr0 681944 688099 -
2 domain predictions
 –
Lj0g3v0019219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
2 domain predictions
 –
Lj0g3v0019219.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
2 domain predictions
 –
Lj0g3v0023469.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g14470-like [Glycine max] gi|356498922|ref|XP_003518295.1| chr0 9368133 9373652 +
2 domain predictions
 –
Lj0g3v0038229.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358347566|ref|XP_003637827.1| chr0 12351274 12354478 +
2 domain predictions
 –
Lj0g3v0047089.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 15709276 15711861 -
2 domain predictions
 –
Lj0g3v0048349.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357498969|ref|XP_003619773.1| chr0 16279906 16280250 +
2 domain predictions
 –
Lj0g3v0048379.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 16286813 16288438 +
2 domain predictions
 –
Lj0g3v0048509.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 16331390 16340624 +
2 domain predictions
 –
Lj0g3v0058699.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| chr0 19316312 19319713 +
2 domain predictions
 –
Lj0g3v0059939.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19914329 19916280 +
2 domain predictions
 –
Lj0g3v0076279.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Cicer arietinum] gi|502162909|ref|XP_004512658.1| chr0 29047759 29048507 -
2 domain predictions
 –
Lj0g3v0078539.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] gi|502153966|ref|XP_004509525.1| chr0 30232657 30234882 +
2 domain predictions
 –
Lj0g3v0079559.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 30771688 30776777 +
2 domain predictions
 –
Lj0g3v0079829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Glycine max] gi|356529499|ref|XP_003533328.1| chr0 30832142 30832830 +
2 domain predictions
 –
Lj0g3v0079949.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357503117|ref|XP_003621847.1| chr0 30927666 30928505 +
2 domain predictions
 –
Lj0g3v0088099.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 35933615 35935806 -
2 domain predictions
 –
Lj0g3v0092809.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] gi|502129532|ref|XP_004500336.1| chr0 38722004 38723934 +
2 domain predictions
 –
Lj0g3v0096339.1
n.a. Auxin response factor [Medicago truncatula] gi|357494039|ref|XP_003617308.1| chr0 40604738 40605030 -
2 domain predictions
 –
Lj0g3v0099669.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like [Cicer arietinum] gi|502142432|ref|XP_004504955.1| chr0 42277000 42279904 +
2 domain predictions
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Lj0g3v0101829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] gi|356540844|ref|XP_003538894.1| chr0 43238167 43241619 -
2 domain predictions
 –
Lj0g3v0109429.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47392331 47394515 -
2 domain predictions
 –
Lj0g3v0109449.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47397077 47401012 -
2 domain predictions
 –
Lj0g3v0109709.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 47529768 47530327 -
2 domain predictions
 –
Lj0g3v0111069.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Glycine max] gi|356561520|ref|XP_003549029.1| chr0 48208969 48211045 +
2 domain predictions
 –
Lj0g3v0116949.1
n.a. pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15240032|ref|NP_196258.1| chr0 51492989 51493753 +
2 domain predictions
 –
Lj0g3v0120569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Cicer arietinum] gi|502138621|ref|XP_004503475.1| chr0 53555319 53556197 -
2 domain predictions
 –
Lj0g3v0124009.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 55654159 55656080 -
2 domain predictions
 –
Lj0g3v0149419.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Cicer arietinum] gi|502162909|ref|XP_004512658.1| chr0 69308696 69309462 +
2 domain predictions
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Lj0g3v0161609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Cicer arietinum] gi|502123624|ref|XP_004498194.1| chr0 76036651 76041134 -
2 domain predictions
 –
Lj0g3v0167179.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Glycine max] gi|356503775|ref|XP_003520679.1| chr0 79465053 79466540 -
2 domain predictions
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Lj0g3v0169899.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 81246788 81247432 -
2 domain predictions
 –
Lj0g3v0179289.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 87021075 87022871 +
2 domain predictions
 –
Lj0g3v0181289.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 88416509 88417543 +
2 domain predictions
 –
Lj0g3v0204779.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like [Glycine max] gi|356532718|ref|XP_003534918.1| chr0 101706518 101707441 +
2 domain predictions
 –
Lj0g3v0211059.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 106261325 106267356 -
2 domain predictions
 –
Lj0g3v0220879.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Glycine max] gi|356561416|ref|XP_003548977.1| chr0 113232417 113232598 +
2 domain predictions
 –
Lj0g3v0227659.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 117655737 117656899 -
2 domain predictions
 –
Lj0g3v0236989.1
n.a. Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao] gi|508719012|gb|EOY10909.1| chr0 122833354 122836685 +
2 domain predictions
 –
Lj0g3v0237819.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Glycine max] gi|356541846|ref|XP_003539383.1| chr0 123311337 123313945 +
2 domain predictions
 –
Lj0g3v0258189.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Cicer arietinum] gi|502123470|ref|XP_004498123.1| chr0 134061431 134063613 +
2 domain predictions
 –
Lj0g3v0259259.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Glycine max] gi|356524104|ref|XP_003530672.1| chr0 134717085 134718619 -
2 domain predictions
 –
Lj0g3v0259639.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cicer arietinum] gi|502140200|ref|XP_004504105.1| chr0 134939665 134942255 -
2 domain predictions
 –
Lj0g3v0261789.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357518651|ref|XP_003629614.1| chr0 135665466 135671329 -
2 domain predictions
 –
Lj0g3v0267139.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 138426103 138432104 -
2 domain predictions
 –
Lj0g3v0267599.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 138650890 138655888 +
2 domain predictions
 –
Lj0g3v0267639.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357499681|ref|XP_003620129.1| chr0 138672760 138673992 -
2 domain predictions
 –
Lj0g3v0273569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Cicer arietinum] gi|502080402|ref|XP_004486552.1| chr0 141805923 141812892 +
2 domain predictions
 –
Lj0g3v0282319.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Cicer arietinum] gi|502138638|ref|XP_004503478.1| chr0 146360397 146363363 +
2 domain predictions
 –