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Lj0g3v0198759.3

Overview

Field Value
Gene ID Lj0g3v0198759
Transcript ID Lj0g3v0198759.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: general transcription factor IIE subunit 1-like [Cicer arietinum] gi|502151714|ref|XP_004508577.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13097:SF7
1 22 22 7.40E-81 –
PANTHER
PTHR13097
1 22 22 7.40E-81 –
ProSiteProfiles
PS51344
5 137 133 31.419
IPR017919
SMART
SM00531
37 205 169 1.90E-57
IPR002853
Pfam
PF02002
39 95 57 3.40E-07
IPR024550
SUPERFAMILY
SSF46785
39 96 58 1.73E-05
IPR011991
PANTHER
PTHR13097:SF7
41 95 55 7.40E-81 –
PANTHER
PTHR13097
41 95 55 7.40E-81 –
Gene3D
G3DSA:1.10.10.10
41 99 59 4.10E-05
IPR011991
Coils
Coil
58 78 21 – –
PANTHER
PTHR13097
118 205 88 7.40E-81 –
PANTHER
PTHR13097:SF7
118 205 88 7.40E-81 –
Gene3D
G3DSA:3.30.40.10
146 205 60 2.10E-19
IPR013083
SUPERFAMILY
SSF57783
146 199 54 4.17E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0198759.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0198759.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.