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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0318659 |
| Transcript ID | Lj0g3v0318659.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | type IIB calcium ATPase [Medicago truncatula] gi|18483249|gb|AAL73984.1|AF466149_1 |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 164 | 164 | – | – | |
| PANTHER | 1 | 882 | 882 | 0 | – | |
| PANTHER | 1 | 882 | 882 | 0 | – | |
| Pfam | 5 | 43 | 39 | 3.60E-16 | ||
| Coils | 46 | 66 | 21 | – | – | |
| TIGRFAM | 105 | 966 | 862 | 1.10E-297 | ||
| Pfam | 113 | 176 | 64 | 2.00E-10 | ||
| SUPERFAMILY | 113 | 228 | 116 | 1.23E-89 | – | |
| TMHMM | 165 | 184 | 20 | – | – | |
| Phobius | 165 | 183 | 19 | – | – | |
| Phobius | 184 | 194 | 11 | – | – | |
| TMHMM | 194 | 211 | 18 | – | – | |
| Phobius | 195 | 214 | 20 | – | – | |
| Pfam | 198 | 436 | 239 | 2.50E-44 | ||
| TIGRFAM | 200 | 467 | 268 | 2.60E-35 | ||
| Phobius | 215 | 346 | 132 | – | – | |
| SUPERFAMILY | 229 | 325 | 97 | 8.24E-24 | – | |
| Gene3D | 270 | 329 | 60 | 2.20E-114 | ||
| PRINTS | 276 | 290 | 15 | 6.30E-31 | – | |
| SUPERFAMILY | 328 | 439 | 112 | 1.23E-89 | – | |
| TMHMM | 347 | 369 | 23 | – | – | |
| Phobius | 347 | 369 | 23 | – | – | |
| Phobius | 370 | 388 | 19 | – | – | |
| Phobius | 389 | 417 | 29 | – | – | |
| TMHMM | 389 | 411 | 23 | – | – | |
| Phobius | 418 | 810 | 393 | – | – | |
| Gene3D | 435 | 650 | 216 | 1.20E-45 | ||
| SUPERFAMILY | 443 | 463 | 21 | 1.98E-51 | ||
| PRINTS | 445 | 459 | 15 | 6.30E-31 | – | |
| ProSitePatterns | 447 | 453 | 7 | – | ||
| SUPERFAMILY | 451 | 655 | 205 | 1.16E-43 | ||
| Pfam | 500 | 584 | 85 | 2.30E-15 | – | |
| SUPERFAMILY | 600 | 850 | 251 | 1.98E-51 | ||
| PRINTS | 603 | 621 | 19 | 1.70E-12 | ||
| PRINTS | 643 | 654 | 12 | 6.30E-31 | – | |
| PRINTS | 665 | 675 | 11 | 6.30E-31 | – | |
| TIGRFAM | 717 | 834 | 118 | 5.70E-27 | ||
| Gene3D | 724 | 966 | 243 | 2.20E-114 | ||
| PRINTS | 746 | 765 | 20 | 6.30E-31 | – | |
| PRINTS | 746 | 762 | 17 | 1.70E-12 | ||
| PRINTS | 770 | 782 | 13 | 6.30E-31 | – | |
| PRINTS | 778 | 803 | 26 | 1.70E-12 | ||
| SUPERFAMILY | 796 | 966 | 171 | 1.23E-89 | – | |
| TMHMM | 806 | 828 | 23 | – | – | |
| Phobius | 811 | 831 | 21 | – | – | |
| Pfam | 831 | 966 | 136 | 2.20E-31 | ||
| Phobius | 832 | 836 | 5 | – | – | |
| TMHMM | 833 | 855 | 23 | – | – | |
| Phobius | 837 | 855 | 19 | – | – | |
| Phobius | 856 | 945 | 90 | – | – | |
| PANTHER | 898 | 966 | 69 | 0 | – | |
| PANTHER | 898 | 966 | 69 | 0 | – | |
| TMHMM | 941 | 963 | 23 | – | – | |
| Phobius | 946 | 966 | 21 | – | – | |
| Phobius | 967 | 1020 | 54 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj0g3v0318659.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0318659.1, powered by CORGI.
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