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Lj0g3v0364399.1

Overview

Field Value
Gene ID Lj0g3v0364399
Transcript ID Lj0g3v0364399.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22870:SF204
1 137 137 3.70E-88 –
PANTHER
PTHR22870
1 137 137 3.70E-88 –
Gene3D
G3DSA:2.130.10.30
37 137 101 4.30E-31
IPR009091
SUPERFAMILY
SSF50985
39 132 94 7.46E-30
IPR009091
ProSitePatterns
PS00626
46 56 11 –
IPR000408
Pfam
PF00415
60 107 48 1.00E-10
IPR000408
ProSiteProfiles
PS50012
60 111 52 12.393
IPR000408
PRINTS
PR00633
61 77 17 1.10E-05
IPR000408
PRINTS
PR00633
95 108 14 1.10E-05
IPR000408
Pfam
PF00415
111 136 26 3.90E-06
IPR000408
ProSiteProfiles
PS50012
112 140 29 10.022
IPR000408
PRINTS
PR00633
114 130 17 1.10E-05
IPR000408

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0364399.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0364399.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.