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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22870
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 102 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.040s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016979.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 6552029 6556345 -
1 domain prediction
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Lj0g3v0090719.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr0 37460052 37461692 -
1 domain prediction
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Lj0g3v0204389.1
n.a. ZR4 protein [Medicago sativa] gi|28874838|emb|CAC84088.1| chr0 101445627 101446081 -
1 domain prediction
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Lj0g3v0204409.2
n.a. ZR4 protein [Medicago sativa] gi|28874838|emb|CAC84088.1| chr0 101446488 101447656 -
1 domain prediction
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Lj0g3v0207459.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356544020|ref|XP_003540454.1| chr0 103681843 103682718 +
1 domain prediction
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Lj0g3v0228699.1
n.a. PREDICTED: protein BREVIS RADIX-like [Glycine max] gi|356559081|ref|XP_003547830.1| chr0 118307982 118315035 +
1 domain prediction
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Lj0g3v0252359.1
n.a. PREDICTED: protein Brevis radix-like 4-like [Vitis vinifera] gi|225444796|ref|XP_002280093.1| chr0 130836604 130841547 -
1 domain prediction
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Lj0g3v0262979.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356544020|ref|XP_003540454.1| chr0 136394071 136394651 -
1 domain prediction
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Lj0g3v0267459.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr0 138571095 138573338 -
1 domain prediction
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
1 domain prediction
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Lj0g3v0275779.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356540207|ref|XP_003538581.1| chr0 143051217 143051470 +
1 domain prediction
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Lj0g3v0275789.1
n.a. RCC1 domain-containing protein [Medicago truncatula] gi|357463177|ref|XP_003601870.1| chr0 143051417 143052502 +
1 domain prediction
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Lj0g3v0275799.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 143052497 143054759 +
1 domain prediction
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Lj0g3v0293039.1
n.a. regulator of chromosome condensation and FYVE zinc finger domain-containing protein [Arabidopsis thaliana] gi|334183781|ref|NP_177129.2| chr0 152100838 152116145 -
1 domain prediction
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
1 domain prediction
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
1 domain prediction
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Lj0g3v0364399.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr0 192286445 192288512 +
1 domain prediction
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Lj0g3v0364399.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192286445 192287657 +
1 domain prediction
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Lj0g3v0364439.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192316268 192317541 +
1 domain prediction
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Lj1g3v1357910.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cicer arietinum] gi|502137117|ref|XP_004502975.1| chr1 16212729 16219571 +
1 domain prediction
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Lj1g3v1364450.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356508920|ref|XP_003523201.1| chr1 16484655 16491180 -
1 domain prediction
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Lj1g3v2068690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356507929|ref|XP_003522715.1| chr1 24462770 24465804 +
1 domain prediction
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Lj1g3v2443930.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28512068 28513950 -
1 domain prediction
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Lj1g3v2443940.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28515625 28516676 -
1 domain prediction
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Lj1g3v3053800.1
n.a. PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] gi|356568831|ref|XP_003552611.1| chr1 34855056 34860778 -
1 domain prediction
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Lj1g3v3598300.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502103175|ref|XP_004492220.1| chr1 41448108 41452451 -
1 domain prediction
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Lj1g3v3975580.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357508731|ref|XP_003624654.1| chr1 46892907 46902500 -
1 domain prediction
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Lj2g3v0177210.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502180620|ref|XP_004516679.1| chr2 3224904 3236583 -
1 domain prediction
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Lj2g3v1019870.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 15812944 15815646 -
1 domain prediction
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Lj2g3v1349180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
1 domain prediction
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Lj2g3v1349180.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
1 domain prediction
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Lj2g3v1734790.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502161164|ref|XP_004512057.1| chr2 26827072 26830564 +
1 domain prediction
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Lj2g3v2646170.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35686786 35688975 +
1 domain prediction
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Lj2g3v2646180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35689214 35693783 +
1 domain prediction
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Lj2g3v2646180.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr2 35689214 35693783 +
1 domain prediction
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Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
1 domain prediction
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Lj3g3v1403990.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
1 domain prediction
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Lj3g3v1403990.2
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
1 domain prediction
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Lj3g3v1403990.3
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
1 domain prediction
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Lj3g3v2645610.1
n.a. PREDICTED: protein Brevis radix-like 2-like [Glycine max] gi|356519574|ref|XP_003528447.1| chr3 32294618 32298517 -
1 domain prediction
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Lj4g3v2179280.1
n.a. PREDICTED: protein Brevis radix-like 4-like [Glycine max] gi|356547921|ref|XP_003542353.1| chr4 30154384 30160448 +
1 domain prediction
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Lj4g3v2826730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356512860|ref|XP_003525133.1| chr4 37863422 37870440 +
1 domain prediction
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Lj4g3v2826730.2
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357520093|ref|XP_003630335.1| chr4 37868748 37870440 +
1 domain prediction
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
1 domain prediction
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
1 domain prediction
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Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
1 domain prediction
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Lj6g3v0391180.1
n.a. G93-GW [Glycine max] gi|94983836|gb|ABF50623.1| chr6 3593817 3596219 +
1 domain prediction
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Lj6g3v0948300.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| chr6 10706009 10713387 -
1 domain prediction
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
1 domain prediction
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LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
1 domain prediction
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