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Lj1g3v2312970.1

Overview

Field Value
Gene ID Lj1g3v2312970
Transcript ID Lj1g3v2312970.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23081
1 448 448 0 –
PANTHER
PTHR23081:SF1
1 448 448 0 –
SUPERFAMILY
SSF56784
129 172 44 3.91E-19
IPR023214
ProSiteProfiles
PS50969
134 383 250 16.817
IPR004274
Gene3D
G3DSA:3.40.50.1000
137 164 28 8.10E-15
IPR023214
Pfam
PF03031
142 361 220 3.00E-08
IPR004274
SMART
SM00577
220 370 151 2.80E-09
IPR004274
Gene3D
G3DSA:3.40.50.1000
249 360 112 8.10E-15
IPR023214
SUPERFAMILY
SSF56784
253 386 134 3.91E-19
IPR023214
MobiDBLite
mobidb-lite
492 654 163 – –
PANTHER
PTHR23081:SF1
493 534 42 0 –
PANTHER
PTHR23081
493 534 42 0 –
PANTHER
PTHR23081:SF1
581 755 175 0 –
PANTHER
PTHR23081
581 755 175 0 –
ProSiteProfiles
PS50137
685 751 67 12.087
IPR014720
SMART
SM00358
686 750 65 6.90E-06
IPR014720
SUPERFAMILY
SSF54768
687 749 63 2.32E-11 –
Pfam
PF00035
687 747 61 1.90E-08
IPR014720
CDD
cd00048
687 749 63 1.41E-09 –
Gene3D
G3DSA:3.30.160.20
688 749 62 3.00E-07
IPR014720
MobiDBLite
mobidb-lite
787 842 56 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj1g3v2312970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2312970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.