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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004274
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 60 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.934s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0092919.1
n.a. CTD small phosphatase-like protein [Medicago truncatula] gi|357492701|ref|XP_003616639.1| chr0 38781355 38783555 -
4 domain predictions
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Lj0g3v0104629.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr0 44797780 44799686 +
4 domain predictions
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Lj0g3v0206009.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356498756|ref|XP_003518215.1| chr0 102559018 102562965 -
4 domain predictions
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Lj0g3v0256079.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356498756|ref|XP_003518215.1| chr0 132981113 132986572 +
4 domain predictions
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Lj0g3v0284109.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X4 [Cicer arietinum] gi|502170470|ref|XP_004514839.1| chr0 147395499 147397340 -
3 domain predictions
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Lj0g3v0284109.2
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X1 [Cicer arietinum] gi|502170457|ref|XP_004514836.1| chr0 147395535 147397340 -
3 domain predictions
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Lj1g3v2312970.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
4 domain predictions
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Lj1g3v2312970.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2-like [Glycine max] gi|356521002|ref|XP_003529147.1| chr1 27213345 27223358 -
4 domain predictions
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Lj1g3v3026200.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X4 [Cicer arietinum] gi|502170470|ref|XP_004514839.1| chr1 34645224 34649582 -
4 domain predictions
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Lj1g3v3026200.2
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X4 [Cicer arietinum] gi|502170470|ref|XP_004514839.1| chr1 34645224 34649582 -
4 domain predictions
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Lj1g3v3137940.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] gi|356523718|ref|XP_003530482.1| chr1 35782084 35788576 -
4 domain predictions
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Lj1g3v4105850.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356498756|ref|XP_003518215.1| chr1 48703288 48705253 -
4 domain predictions
 –
Lj1g3v4105850.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like isoform X3 [Cicer arietinum] gi|502149964|ref|XP_004507727.1| chr1 48703288 48705253 -
4 domain predictions
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Lj2g3v1102910.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X3 [Cicer arietinum] gi|502170466|ref|XP_004514838.1| chr2 17728242 17732634 -
4 domain predictions
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Lj2g3v1102910.2
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X4 [Cicer arietinum] gi|502170470|ref|XP_004514839.1| chr2 17729460 17732634 -
4 domain predictions
 –
Lj2g3v2748740.2
n.a. CTD small phosphatase-like protein [Medicago truncatula] gi|357492701|ref|XP_003616639.1| chr2 36406759 36411765 -
4 domain predictions
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Lj2g3v3281270.1
n.a. PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Glycine max] gi|356552618|ref|XP_003544661.1| chr2 41741671 41746170 -
4 domain predictions
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Lj3g3v0797550.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr3 9610104 9615130 -
4 domain predictions
 –
Lj3g3v0797550.2
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr3 9610104 9615103 -
4 domain predictions
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Lj4g3v0450840.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] gi|356521333|ref|XP_003529311.1| chr4 6448369 6458652 +
4 domain predictions
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Lj4g3v0450840.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max] gi|356521333|ref|XP_003529311.1| chr4 6448369 6459827 +
4 domain predictions
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Lj4g3v1983360.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like isoform X1 [Cicer arietinum] gi|502149960|ref|XP_004507725.1| chr4 27529781 27535101 -
4 domain predictions
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Lj4g3v1983360.2
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356564913|ref|XP_003550691.1| chr4 27529781 27535101 -
4 domain predictions
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Lj4g3v2293410.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508774843|gb|EOY22099.1| chr4 31901562 31913700 +
4 domain predictions
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Lj4g3v2293410.2
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508774845|gb|EOY22101.1| chr4 31901562 31905542 +
3 domain predictions
 –
Lj4g3v2293410.3
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508774843|gb|EOY22099.1| chr4 31901562 31913700 +
4 domain predictions
 –
Lj4g3v2293410.4
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508774843|gb|EOY22099.1| chr4 31901562 31913700 +
4 domain predictions
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Lj4g3v2295760.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502086585|ref|XP_004488263.1| chr4 32007610 32012466 -
4 domain predictions
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Lj4g3v2690700.1
n.a. PREDICTED: ubiquitin-like domain-containing CTD phosphatase-like [Glycine max] gi|356525365|ref|XP_003531295.1| chr4 36201008 36204305 +
4 domain predictions
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Lj6g3v1093500.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502086585|ref|XP_004488263.1| chr6 13402219 13411640 +
4 domain predictions
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Lj6g3v1968100.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X1 [Cicer arietinum] gi|502078420|ref|XP_004485939.1| chr6 22798032 22799266 +
4 domain predictions
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LotjaGi1g1v0017100.1
n.a. Mitochondrial import inner membrane translocase subunit TIM50; TAIR: AT1G55900.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50; TrEMBL-Plants: tr|V7B9A1|V7B9A1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0017100 LjG1.1_chr1 2156578 2161043 +
4 domain predictions
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LotjaGi1g1v0077300.1
n.a. CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 LjG1.1_chr1 11181086 11186776 +
4 domain predictions
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LotjaGi1g1v0077300.2
n.a. CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 LjG1.1_chr1 11181518 11186282 +
4 domain predictions
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LotjaGi1g1v0197700.1
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|V7B1L6|V7B1L6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0197700 LjG1.1_chr1 40843374 40851850 -
4 domain predictions
 –
LotjaGi1g1v0212400_LC.1
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46770714 46783745 +
4 domain predictions
 –
LotjaGi1g1v0212400_LC.2
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46770714 46783745 +
4 domain predictions
 –
LotjaGi1g1v0212400_LC.3
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46770714 46783745 +
4 domain predictions
 –
LotjaGi1g1v0212400_LC.4
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46770714 46783745 +
4 domain predictions
 –
LotjaGi1g1v0212400_LC.5
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46772024 46783390 +
4 domain predictions
 –
LotjaGi1g1v0212400_LC.6
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A0L9UB26|A0A0L9UB26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212400_LC LjG1.1_chr1 46772024 46783390 +
4 domain predictions
 –
LotjaGi1g1v0439500.1
n.a. RNA polymerase II C-terminal domain phosphatase-like 2; TAIR: AT5G01270.1 carboxyl-terminal domain (ctd) phosphatase-like 2; Swiss-Prot: sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2; TrEMBL-Plants: tr|K7L1T3|K7L1T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0439500 LjG1.1_chr1 93545380 93556947 -
4 domain predictions
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LotjaGi1g1v0514700.1
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|A0A151RYH2|A0A151RYH2_CAJCA Putative FCP1 isogenyy domain-containing protein C1271.03c family; Found in the gene: LotjaGi1g1v0514700 LjG1.1_chr1 103718502 103723946 -
4 domain predictions
 –
LotjaGi1g1v0529200.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT2G33540.1 C-terminal domain phosphatase-like 3; Swiss-Prot: sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3; TrEMBL-Plants: tr|I1KWR8|I1KWR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529200 LjG1.1_chr1 105567118 105575319 -
4 domain predictions
 –
LotjaGi1g1v0661000.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A072UR90|A0A072UR90_MEDTR Carboxy-terminal domain phosphatase-like protein; Found in the gene: LotjaGi1g1v0661000 LjG1.1_chr1 122167576 122175926 -
4 domain predictions
 –
LotjaGi2g1v0267000.1
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|K7MW97|K7MW97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0267000 LjG1.1_chr2 73677838 73682682 -
4 domain predictions
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LotjaGi2g1v0267000.2
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|K7MW97|K7MW97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0267000 LjG1.1_chr2 73677885 73682780 -
4 domain predictions
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LotjaGi2g1v0319200_LC.1
n.a. Serine/threonine-protein phosphatase 7 long form-like protein; TAIR: AT2G04865.1 Aminotransferase-like, plant mobile domain family protein; Swiss-Prot: sp|F4IFD0|MAIL2_ARATH Protein MAIN-LIKE 2; TrEMBL-Plants: tr|A2Q553|A2Q553_MEDTR Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0319200_LC LjG1.1_chr2 79400725 79407516 -
3 domain predictions
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LotjaGi3g1v0101500.1
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A072UU09|A0A072UU09_MEDTR NLI interacting factor-like phosphatase; Found in the gene: LotjaGi3g1v0101500 LjG1.1_chr3 12564384 12569634 +
4 domain predictions
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LotjaGi3g1v0101500.2
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A072UU09|A0A072UU09_MEDTR NLI interacting factor-like phosphatase; Found in the gene: LotjaGi3g1v0101500 LjG1.1_chr3 12564465 12569596 +
4 domain predictions
 –