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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2309990 |
| Transcript ID | Lj3g3v2309990.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 3.50E-79 | – | |
| PANTHER | 1 | 219 | 219 | 3.50E-79 | – | |
| Phobius | 1 | 284 | 284 | – | – | |
| Pfam | 5 | 37 | 33 | 2.00E-05 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.071 | ||
| TIGRFAM | 15 | 44 | 30 | 6.60E-05 | ||
| Pfam | 51 | 100 | 50 | 2.50E-14 | ||
| ProSiteProfiles | 52 | 86 | 35 | 12.551 | ||
| TIGRFAM | 54 | 88 | 35 | 5.30E-09 | ||
| ProSiteProfiles | 87 | 121 | 35 | 9.175 | ||
| TIGRFAM | 89 | 117 | 29 | 2.20E-05 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.552 | ||
| PANTHER | 235 | 369 | 135 | 3.50E-79 | – | |
| PANTHER | 235 | 369 | 135 | 3.50E-79 | – | |
| ProSiteProfiles | 258 | 292 | 35 | 9.745 | ||
| TIGRFAM | 261 | 292 | 32 | 8.50E-04 | ||
| Pfam | 261 | 290 | 30 | 0.0047 | ||
| Phobius | 285 | 304 | 20 | – | – | |
| Phobius | 305 | 374 | 70 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v2309990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2309990.1, powered by CORGI.
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