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Lj3g3v3752290.1

Overview

Field Value
Gene ID Lj3g3v3752290
Transcript ID Lj3g3v3752290.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF48371
3 230 228 2.43E-42
IPR016024
Gene3D
G3DSA:1.25.10.10
6 236 231 6.60E-48
IPR011989
Pfam
PF12054
196 650 455 1.70E-103
IPR022707
SUPERFAMILY
SSF48371
303 340 38 2.43E-42
IPR016024
Gene3D
G3DSA:1.25.10.10
305 388 84 6.60E-48
IPR011989
SUPERFAMILY
SSF48371
528 581 54 2.43E-42
IPR016024
Gene3D
G3DSA:1.25.10.10
534 999 466 6.60E-48
IPR011989
SUPERFAMILY
SSF48371
627 906 280 2.43E-42
IPR016024
SUPERFAMILY
SSF52540
846 1099 254 5.91E-55
IPR027417
SMART
SM00487
863 1059 197 7.50E-28
IPR014001
PANTHER
PTHR10799:SF753
867 1067 201 1.60E-110 –
PANTHER
PTHR10799
867 1067 201 1.60E-110 –
ProSiteProfiles
PS51192
879 1049 171 20.248
IPR014001
Pfam
PF00176
885 1158 274 1.90E-56
IPR000330
CDD
cd00046
887 1031 145 2.27E-17 –
PANTHER
PTHR10799
1084 1131 48 1.60E-110 –
PANTHER
PTHR10799:SF753
1084 1131 48 1.60E-110 –
MobiDBLite
mobidb-lite
1138 1169 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj3g3v3752290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3752290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.