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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000330
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 155 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.855s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004669.1
n.a. DNA/RNA helicase protein isoform 1 [Theobroma cacao] gi|508786331|gb|EOY33587.1| chr0 1717470 1734459 -
2 domain predictions
1 GO term
Lj0g3v0004669.2
n.a. DNA/RNA helicase protein isoform 1 [Theobroma cacao] gi|508786331|gb|EOY33587.1| chr0 1721323 1734459 -
2 domain predictions
1 GO term
Lj0g3v0014299.1
n.a. PREDICTED: DNA repair protein rhp26-like [Cicer arietinum] gi|502114921|ref|XP_004495082.1| chr0 5479405 5486022 +
2 domain predictions
1 GO term
Lj0g3v0072849.1
n.a. PREDICTED: F-box protein At3g54460-like [Glycine max] gi|356541572|ref|XP_003539248.1| chr0 27153265 27160791 +
2 domain predictions
1 GO term
Lj0g3v0081919.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr0 32070162 32074555 -
2 domain predictions
1 GO term
Lj0g3v0138089.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1| chr0 63330662 63332584 -
2 domain predictions
1 GO term
Lj0g3v0198599.1
n.a. PREDICTED: helicase SWR1-like [Glycine max] gi|356577572|ref|XP_003556898.1| chr0 96970064 96975196 +
2 domain predictions
1 GO term
Lj0g3v0198599.2
n.a. PREDICTED: helicase SWR1-like [Glycine max] gi|356577572|ref|XP_003556898.1| chr0 96972202 96974576 +
2 domain predictions
1 GO term
Lj0g3v0215649.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357503527|ref|XP_003622052.1| chr0 109319112 109321654 +
2 domain predictions
1 GO term
Lj0g3v0216559.1
n.a. PREDICTED: DNA repair protein rhp54-like [Glycine max] gi|356544159|ref|XP_003540522.1| chr0 109975188 109975864 -
2 domain predictions
1 GO term
Lj0g3v0282239.1
n.a. Helicase protein with RING/U-box domain [Theobroma cacao] gi|508714076|gb|EOY05973.1| chr0 146329668 146335635 +
2 domain predictions
1 GO term
Lj0g3v0322239.3
n.a. PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max] gi|356519100|ref|XP_003528212.1| chr0 168239618 168257141 -
2 domain predictions
1 GO term
Lj0g3v0342229.2
n.a. PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X2 [Cicer arietinum] gi|502151178|ref|XP_004508316.1| chr0 179406018 179409290 -
2 domain predictions
1 GO term
Lj1g3v0013390.1
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 129033 142426 +
2 domain predictions
1 GO term
Lj1g3v0013390.2
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 129033 139310 +
2 domain predictions
1 GO term
Lj1g3v0014450.1
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 157142 165373 -
2 domain predictions
1 GO term
Lj1g3v0052650.1
n.a. PREDICTED: transcription regulatory protein SNF2-like [Glycine max] gi|356541302|ref|XP_003539117.1| chr1 609689 616808 +
2 domain predictions
1 GO term
Lj1g3v0270280.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 3240152 3248562 -
2 domain predictions
1 GO term
Lj1g3v1820910.1
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22231340 +
2 domain predictions
1 GO term
Lj1g3v1820910.2
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi|356515042|ref|XP_003526210.1| chr1 22216700 22234993 +
2 domain predictions
1 GO term
Lj1g3v1820910.3
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22234993 +
2 domain predictions
1 GO term
Lj1g3v2682530.1
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31209960 31217614 +
2 domain predictions
1 GO term
Lj1g3v2682530.2
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31212558 31217614 +
2 domain predictions
1 GO term
Lj1g3v3608470.1
n.a. PREDICTED: transcriptional regulator ATRX-like [Cicer arietinum] gi|502178492|ref|XP_004516267.1| chr1 41605163 41606099 +
2 domain predictions
1 GO term
Lj1g3v4104770.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 48682768 48686818 -
2 domain predictions
1 GO term
Lj1g3v4226890.1
n.a. PREDICTED: DNA helicase INO80-like isoform 2 [Glycine max] gi|356572004|ref|XP_003554160.1| chr1 49926976 49938161 +
2 domain predictions
1 GO term
Lj1g3v4590860.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr1 54828110 54840792 -
2 domain predictions
1 GO term
Lj2g3v1758530.1
n.a. PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max] gi|356495411|ref|XP_003516571.1| chr2 27090943 27096344 +
2 domain predictions
1 GO term
Lj2g3v1988820.1
n.a. DNA repair protein rhp54 [Aegilops tauschii] gi|475601294|gb|EMT24776.1| chr2 29602466 29606552 +
2 domain predictions
1 GO term
Lj2g3v2171850.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32539934 32563736 -
2 domain predictions
1 GO term
Lj2g3v2171850.2
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32540380 32563736 -
2 domain predictions
1 GO term
Lj2g3v2831890.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1| chr2 36944549 36953633 -
2 domain predictions
1 GO term
Lj2g3v3058550.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Glycine max] gi|356554106|ref|XP_003545390.1| chr2 39345611 39360517 -
2 domain predictions
1 GO term
Lj3g3v0300710.1
n.a. PREDICTED: transcriptional regulator ATRX-like [Cicer arietinum] gi|502178492|ref|XP_004516267.1| chr3 2163195 2167011 -
2 domain predictions
1 GO term
Lj3g3v2341100.1
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356560792|ref|XP_003548671.1| chr3 29460340 29466945 +
2 domain predictions
1 GO term
Lj3g3v2910770.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36300211 36306667 +
2 domain predictions
1 GO term
Lj3g3v2920810.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36326603 36335573 +
2 domain predictions
1 GO term
Lj3g3v2920810.2
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36326603 36335573 +
2 domain predictions
1 GO term
Lj3g3v2923220.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1| chr3 36508448 36510736 -
2 domain predictions
1 GO term
Lj3g3v3752290.1
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45434486 45453443 -
2 domain predictions
1 GO term
Lj3g3v3752290.2
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45434486 45453443 -
2 domain predictions
1 GO term
Lj3g3v3752290.3
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr3 45435657 45453443 -
2 domain predictions
1 GO term
Lj4g3v0070810.1
n.a. PREDICTED: DNA repair protein rhp54-like [Glycine max] gi|356544159|ref|XP_003540522.1| chr4 465543 466750 -
2 domain predictions
1 GO term
Lj4g3v0244050.1
n.a. Chromatin remodeling complex subunit [Theobroma cacao] gi|508704985|gb|EOX96881.1| chr4 2917943 2935630 -
2 domain predictions
1 GO term
Lj4g3v0450230.1
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr4 6171951 6191456 +
2 domain predictions
1 GO term
Lj4g3v0877830.2
n.a. PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1| chr4 13306784 13316143 +
2 domain predictions
1 GO term
Lj4g3v2225690.1
n.a. PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like isoform X1 [Cicer arietinum] gi|502150689|ref|XP_004508075.1| chr4 30843854 30850714 +
2 domain predictions
1 GO term
Lj4g3v2225690.3
n.a. PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like isoform X1 [Cicer arietinum] gi|502150689|ref|XP_004508075.1| chr4 30843858 30850714 +
2 domain predictions
1 GO term
Lj4g3v2371620.1
n.a. Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| chr4 32657217 32664868 -
2 domain predictions
1 GO term
Lj4g3v2825680.1
n.a. PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max] gi|356527520|ref|XP_003532357.1| chr4 37825732 37833531 +
2 domain predictions
1 GO term