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Lj4g3v0166160.2

Overview

Field Value
Gene ID Lj4g3v0166160
Transcript ID Lj4g3v0166160.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: peptide transporter PTR2-like [Glycine max] gi|356525018|ref|XP_003531124.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 87 87
PANTHER 3 572 570 0
PANTHER 3 572 570 0
SUPERFAMILY 41 258 218 8.89E-20
CDD 63 252 190 6.70E-04
Phobius 88 106 19
TMHMM 88 110 23
ProSitePatterns 102 126 25
Phobius 107 112 6
Pfam 113 543 431 1.90E-123
Phobius 113 139 27
TMHMM 115 137 23
Phobius 140 158 19
TMHMM 157 179 23
Phobius 159 182 24
Phobius 183 202 20
TMHMM 200 222 23
Phobius 203 222 20
Phobius 223 227 5
TMHMM 226 248 23
Phobius 228 248 21
Phobius 249 349 101
SUPERFAMILY 322 575 254 8.89E-20
TMHMM 346 365 20
Phobius 350 372 23
Phobius 373 391 19
TMHMM 385 407 23
Phobius 392 412 21
Phobius 413 432 20
Phobius 433 456 24
TMHMM 433 455 23
Phobius 457 475 19
TMHMM 470 492 23
Phobius 476 498 23
Phobius 499 509 11
Phobius 510 535 26
TMHMM 513 535 23
Phobius 536 554 19
Phobius 555 577 23
TMHMM 555 577 23
Phobius 578 596 19

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of Lj4g3v0166160.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0166160.2, powered by CORGI.

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