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Lj5g3v1259870.2

Overview

Field Value
Gene ID Lj5g3v1259870
Transcript ID Lj5g3v1259870.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cicer arietinum] gi|502116601|ref|XP_004495510.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14571
1 112 112 0 –
PANTHER
PTHR14571:SF9
1 112 112 0 –
SUPERFAMILY
SSF57903
14 73 60 3.32E-12
IPR011011
Gene3D
G3DSA:3.30.40.10
15 74 60 2.70E-11
IPR013083
SMART
SM00249
25 68 44 2.40E-05
IPR001965
ProSitePatterns
PS01359
26 67 42 –
IPR019786
MobiDBLite
mobidb-lite
66 85 20 – –
PANTHER
PTHR14571
129 1171 1043 0 –
PANTHER
PTHR14571:SF9
129 1171 1043 0 –
MobiDBLite
mobidb-lite
250 337 88 – –
MobiDBLite
mobidb-lite
405 424 20 – –
MobiDBLite
mobidb-lite
564 819 256 – –
MobiDBLite
mobidb-lite
834 862 29 – –
MobiDBLite
mobidb-lite
882 929 48 – –
MobiDBLite
mobidb-lite
1061 1172 112 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj5g3v1259870.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1259870.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.