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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001965
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 253 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 7.852s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001909.1
n.a. PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1| chr0 569294 573046 -
2 domain predictions
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Lj0g3v0060169.1
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr0 20004399 20008108 -
2 domain predictions
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Lj0g3v0062699.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi|356518627|ref|XP_003527980.1| chr0 21108503 21118988 -
2 domain predictions
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Lj0g3v0081929.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr0 32075747 32077988 -
2 domain predictions
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Lj0g3v0087639.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr0 35678964 35683219 +
2 domain predictions
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Lj0g3v0089799.1
n.a. PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1| chr0 36907543 36909917 +
2 domain predictions
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Lj0g3v0089809.1
n.a. n.a. chr0 36907543 36910023 -
2 domain predictions
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Lj0g3v0100699.1
n.a. PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1| chr0 42586261 42594667 -
2 domain predictions
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Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0127099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0127099.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0173019.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr0 83166197 83170289 -
2 domain predictions
 –
Lj0g3v0191649.1
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
 –
Lj0g3v0191649.2
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
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Lj0g3v0191649.3
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 93677552 93684896 +
2 domain predictions
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Lj0g3v0250639.1
n.a. Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|357490843|ref|XP_003615709.1| chr0 129933813 129937589 -
2 domain predictions
 –
Lj0g3v0262259.1
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0262259.2
n.a. DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297843332|ref|XP_002889547.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0315929.1
n.a. chromatin remodeling 4 protein [Arabidopsis thaliana] gi|334188199|ref|NP_199293.3| chr0 164962073 164963504 +
2 domain predictions
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Lj0g3v0335379.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi|502161278|ref|XP_004512104.1| chr0 175643447 175647690 +
2 domain predictions
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Lj0g3v0349129.2
n.a. PREDICTED: inhibitor of growth protein 4-like [Glycine max] gi|356534854|ref|XP_003535966.1| chr0 183291853 183295192 -
2 domain predictions
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Lj0g3v0359919.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr0 189530378 189533856 -
2 domain predictions
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Lj1g3v0084860.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|334186543|ref|NP_193228.6| chr1 747721 755417 +
2 domain predictions
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Lj1g3v0117810.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] gi|502159141|ref|XP_004511407.1| chr1 1492164 1499618 -
2 domain predictions
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Lj1g3v0268490.1
n.a. RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|42563280|ref|NP_177849.2| chr1 2937974 2946439 -
2 domain predictions
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Lj1g3v0749150.1
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v0749150.2
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v1289030.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATXR5-like [Cicer arietinum] gi|502136971|ref|XP_004502916.1| chr1 15289335 15289755 -
2 domain predictions
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Lj1g3v1787670.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr1 21245070 21249961 -
2 domain predictions
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Lj1g3v1820910.1
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22231340 +
2 domain predictions
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Lj1g3v1820910.2
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi|356515042|ref|XP_003526210.1| chr1 22216700 22234993 +
2 domain predictions
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Lj1g3v1820910.3
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22234993 +
2 domain predictions
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Lj1g3v2326720.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr1 27560804 27566260 +
2 domain predictions
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Lj1g3v2883830.1
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr1 32505957 32510453 -
2 domain predictions
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Lj1g3v2883830.2
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr1 32505957 32510453 -
2 domain predictions
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Lj1g3v3139990.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356568903|ref|XP_003552647.1| chr1 35825583 35835601 -
2 domain predictions
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Lj1g3v3357590.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590942 -
2 domain predictions
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Lj1g3v3357590.2
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590892 -
2 domain predictions
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Lj1g3v3381180.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr1 38711786 38715893 -
2 domain predictions
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Lj1g3v3832560.1
n.a. PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATXR6-like [Cicer arietinum] gi|502124379|ref|XP_004498502.1| chr1 43398903 43401519 +
2 domain predictions
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Lj1g3v3974980.1
n.a. Inhibitor of growth protein [Medicago truncatula] gi|357508653|ref|XP_003624615.1| chr1 46665514 46670562 +
2 domain predictions
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Lj1g3v4327760.1
n.a. cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|15226210|ref|NP_180334.1| chr1 50918128 50920697 +
2 domain predictions
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Lj1g3v4590860.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr1 54828110 54840792 -
2 domain predictions
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Lj1g3v4691520.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357510879|ref|XP_003625728.1| chr1 55550314 55558595 -
2 domain predictions
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Lj1g3v4766270.1
n.a. PREDICTED: bromodomain adjacent to zinc finger domain protein 1A-like isoform X1 [Cicer arietinum] gi|502113145|ref|XP_004494555.1| chr1 57540299 57543834 +
2 domain predictions
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Lj1g3v5034780.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi|502113957|ref|XP_004494815.1| chr1 61526566 61539647 -
2 domain predictions
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Lj2g3v1014400.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| chr2 15598802 15614731 -
2 domain predictions
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Lj2g3v2017660.1
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481615|ref|XP_003611093.1| chr2 30946701 30948203 -
2 domain predictions
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Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
2 domain predictions
 –