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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1806980 |
| Transcript ID | Lj5g3v1806980.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pumilio homolog 4-like isoform X5 [Cicer arietinum] gi|502118398|ref|XP_004496247.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 0 | – | |
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 157 | 157 | 0 | – | |
| PANTHER | 176 | 976 | 801 | 0 | – | |
| PANTHER | 176 | 976 | 801 | 0 | – | |
| Pfam | 396 | 644 | 249 | 3.00E-69 | ||
| ProSiteProfiles | 626 | 966 | 341 | 132.804 | ||
| SUPERFAMILY | 629 | 963 | 335 | 1.23E-118 | ||
| Gene3D | 629 | 969 | 341 | 4.10E-139 | ||
| CDD | 642 | 962 | 321 | 6.71E-170 | ||
| ProSiteProfiles | 646 | 681 | 36 | 11.16 | ||
| SMART | 646 | 681 | 36 | 5.50E-07 | ||
| Pfam | 647 | 680 | 34 | 7.40E-08 | ||
| Pfam | 682 | 714 | 33 | 2.30E-08 | ||
| ProSiteProfiles | 682 | 717 | 36 | 10.81 | ||
| SMART | 682 | 717 | 36 | 3.40E-09 | ||
| SMART | 718 | 753 | 36 | 1.10E-06 | ||
| ProSiteProfiles | 718 | 753 | 36 | 11.09 | ||
| Pfam | 720 | 751 | 32 | 2.80E-05 | ||
| SMART | 754 | 789 | 36 | 7.70E-07 | ||
| ProSiteProfiles | 754 | 789 | 36 | 9.667 | ||
| Pfam | 756 | 787 | 32 | 3.80E-06 | ||
| SMART | 790 | 825 | 36 | 3.00E-07 | ||
| ProSiteProfiles | 790 | 826 | 37 | 10.81 | ||
| Pfam | 791 | 824 | 34 | 2.50E-07 | ||
| ProSiteProfiles | 827 | 862 | 36 | 12.07 | ||
| SMART | 827 | 862 | 36 | 1.10E-06 | ||
| Pfam | 831 | 854 | 24 | 9.30E-08 | ||
| ProSiteProfiles | 863 | 898 | 36 | 9.994 | ||
| SMART | 863 | 898 | 36 | 1.30E-06 | ||
| Pfam | 865 | 896 | 32 | 1.10E-04 | ||
| ProSiteProfiles | 899 | 940 | 42 | 10.017 | ||
| SMART | 905 | 940 | 36 | 1.60E-05 | ||
| Pfam | 913 | 937 | 25 | 8.40E-06 | ||
| ProSiteProfiles | 941 | 977 | 37 | 4.744 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj5g3v1806980.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1806980.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.