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cd07920

Source: CDD

Description

Pumilio

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 34

Transcript Name Description Predicted domains Domain count
Lj0g3v0047679.1
– PREDICTED: pumilio homolog 1-like isoform X2 [Cicer arietinum] gi|502096967|ref|XP_004490876.1|
Domains
17
Lj0g3v0219909.1
– PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1|
Domains
17
Lj0g3v0219909.3
– PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1|
Domains
17
Lj0g3v0249229.1
– PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1|
Domains
14
Lj0g3v0254439.1
– Pumilio-like protein [Medicago truncatula] gi|357454231|ref|XP_003597396.1|
Domains
16
Lj1g3v1708950.1
– PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1|
Domains
14
Lj4g3v2122820.1
– PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 6, chloroplastic-like [Glycine max] gi|356550736|ref|XP_003543740.1|
Domains
15
Lj5g3v1806980.1
– PREDICTED: pumilio homolog 4-like isoform X4 [Cicer arietinum] gi|502118396|ref|XP_004496246.1|
Domains
17
Lj5g3v1806980.2
– PREDICTED: pumilio homolog 4-like isoform X5 [Cicer arietinum] gi|502118398|ref|XP_004496247.1|
Domains
17
Lj6g3v1356520.1
– PREDICTED: pumilio homolog 5-like [Cicer arietinum] gi|502085772|ref|XP_004488002.1|
Domains
15
Lj6g3v2218350.1
– PREDICTED: pumilio homolog 2-like [Glycine max] gi|356557551|ref|XP_003547079.1|
Domains
15
LotjaGi1g1v0088100.1
– Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100
Domains
17
LotjaGi1g1v0088100.2
– Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100
Domains
17
LotjaGi1g1v0146700.1
– Pumilio; TAIR: AT1G22240.1 pumilio 8; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|G7KAF0|G7KAF0_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0146700
Domains
14
LotjaGi1g1v0359500.1
– Pumilio-like protein; TAIR: AT5G56510.1 pumilio 12; Swiss-Prot: sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12; TrEMBL-Plants: tr|K7KT25|K7KT25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0359500
Domains
15
LotjaGi3g1v0285500.1
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285500.2
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285500.3
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285500.4
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285500.5
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285500.6
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500
Domains
17
LotjaGi3g1v0285800.1
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800
Domains
17
LotjaGi3g1v0285800.2
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800
Domains
17
LotjaGi3g1v0285800.3
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800
Domains
17
LotjaGi3g1v0285800.4
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285800
Domains
17
LotjaGi3g1v0285800.5
– Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800
Domains
17
LotjaGi4g1v0304100.1
– Pumilio, putative; TAIR: AT4G25880.4 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100
Domains
15
LotjaGi4g1v0304100.2
– Pumilio, putative; TAIR: AT4G25880.1 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100
Domains
15
LotjaGi4g1v0304100.3
– Pumilio, putative; TAIR: AT4G25880.1 pumilio 6; Swiss-Prot: sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic; TrEMBL-Plants: tr|K7LWU3|K7LWU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0304100
Domains
15
LotjaGi5g1v0271700.1
– Pumilio, putative; TAIR: AT3G10360.1 pumilio 4; Swiss-Prot: sp|Q9SS47|PUM4_ARATH Pumilio homolog 4; TrEMBL-Plants: tr|I1NHH7|I1NHH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271700
Domains
17
LotjaGi5g1v0271700.2
– Pumilio, putative; TAIR: AT3G10360.1 pumilio 4; Swiss-Prot: sp|Q9SS47|PUM4_ARATH Pumilio homolog 4; TrEMBL-Plants: tr|I1NHH7|I1NHH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271700
Domains
17
LotjaGi6g1v0239800.1
– Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|I1L1B8|I1L1B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0239800
Domains
15
LotjaGi6g1v0239800.2
– Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|A0A0B2RRT4|A0A0B2RRT4_GLYSO Pumilio like 5; Found in the gene: LotjaGi6g1v0239800
Domains
15
LotjaGi6g1v0353100.1
– Pumilio; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|A0A0B2RFZ1|A0A0B2RFZ1_GLYSO Putative pumilio like 7, chloroplastic; Found in the gene: LotjaGi6g1v0353100
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.94