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Lj6g3v0781000.2

Overview

Field Value
Gene ID Lj6g3v0781000
Transcript ID Lj6g3v0781000.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|358343988|ref|XP_003636077.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24223:SF181
1 256 256 3.90E-178 –
ProSiteProfiles
PS50893
1 195 195 16.84
IPR003439
PANTHER
PTHR24223
1 256 256 3.90E-178 –
Pfam
PF00005
2 124 123 3.00E-19
IPR003439
SMART
SM00382
2 180 179 6.90E-08
IPR003593
Gene3D
G3DSA:3.40.50.300
2 198 197 3.70E-61
IPR027417
SUPERFAMILY
SSF52540
2 194 193 1.02E-52
IPR027417
CDD
cd03250
3 172 170 1.03E-107 –
ProSitePatterns
PS00211
97 111 15 –
IPR017871
MobiDBLite
mobidb-lite
231 256 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 46

Expression data

Expression pattern

Expression pattern of Lj6g3v0781000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0781000.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.