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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004200 |
| Transcript ID | LotjaGi1g1v0004200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:767785..769826) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGAAAGAGATGGTTAGGTGAGGTTCCACTCTGCATTATAGATAACATATTGCTTTGATATGCTACATGATCCTTCAT GTCAAAATTTTACATAATAGTGTCATGTTAAAATTTGATGTTAACTCTCTCTTCATACCTATTAAATGAGTGAGTGACAA CTTATAGACATTTATGAAGAGAAAAAAACACATCAAGTTTCATGATACAATGTAATATGACATGAGAGGATCATAATCCG CAATTTCATAGACTACATACTAAATATTATGTTGGCTGAACCATTTTTCCTTCCTAAGGTTTTTGAACTGCGCTATATTT GGCTTTGGAGCTGAGTTATCTCATACACTGCCCCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCT TCAAGGGTATTCCGGTATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACCATAATGTCACCCCTGTCTTGC CATTACGTGGTACAGTCACGGCTTCTGGTGATCTTATTCCTCTGTCCTACATTGTTGCATTGCTAATTGGTAGGCGAAAC TCCAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCAATTTAGCAGGTCTGAATTCTGGGTTCTT TGAGCTGAATCCCAAGGAAGGCGTTGCCCTTGTAAATGGCACAGCCGTTGGATCTGGCGTAGCTGCTGTGGTACTTTTTG AGACAAACATATTAGCTTTATTGTCAGTAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACG CACCATCTTATACACAAGCTCAAGTACCATCCAGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAG CTCGTATATCAAATATGCTAAACTGCAGCAAGCAGATCCATCGCAGAAGCCTAGGAAAGATCGCTATGCTCTTCAAACTT CTCCTCAATGGCTTGGTCCACAGATTGAAGTCATCCGTTATTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAAT GACAATCCTTTGATTGATGTCACTGGGAATAAGGTTTTGAATGGGGGTAATTTCCAAGGCACCCCAATTGGAGTTGCCAT GGATAATGTACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTGAATGACTTGTATA ATAATGGTTTGCCATCAAATCTCTCAGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATG GCTGCTTATTGTTCAGAACTCCAATATTTAGCAAATCCGGTAACGAGCCACGTGCAGAGTGCTGAACAGCACAACCAAGA TGTGAACTCTTTGGGCTTAATTTCTGCATGGAAAACCGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATACT TGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAAGAAATTTTTAAGAACACGGTCAGGAATACCATAAGCACG GTTGCAAAGAAGACATTATCCATAGAAGACAAAGAAGAAATCAACCCATTTCGATTTTGTGAGAAAGATTTACTCAAAGT GGTTGAGAGAGAATATGTATTCTCCTACATTGATGATCCATCCAACGTCATGTACCCACTGATGCCGAAACTAAAGCAGG TACTTTATGAGCAAGCACACATTAGTGCCATTAATGACAAGAATGTGAGCTTGACAATCTTTGACAAGATTGGAGCTTTT GAGGATGAACTGAAGAATCTCTTCCCGAAGGAAGTTGAAAGTGCAAGGTTGGCTTATGAGAAGGGCAATCCAGCAATTCC AAACAGAATTAAGGAATGTAGGTCATACCCGCTGTACAAGTTTGTAAGGGAAGAATTAGGGACAGGGTTGCTGACCGGAG ATAAGACTATCTCACCAGATGAGGACTTTGAAAAAGTATTTACAGCCGTGAGACAAGCAAGGATTGTTGACCCACTTCTG GAATGTCTTGAAGATTGGAATGGAGTTCCCATCCCAATATAA
CDS sequence (LotjaGi1g1v0004200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCCGGTATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCT CAACCATAATGTCACCCCTGTCTTGCCATTACGTGGTACAGTCACGGCTTCTGGTGATCTTATTCCTCTGTCCTACATTG TTGCATTGCTAATTGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCAAT TTAGCAGGTCTGAATTCTGGGTTCTTTGAGCTGAATCCCAAGGAAGGCGTTGCCCTTGTAAATGGCACAGCCGTTGGATC TGGCGTAGCTGCTGTGGTACTTTTTGAGACAAACATATTAGCTTTATTGTCAGTAGTTCTATCAGCAGTTTTTGCTGAAG TCATGCAGGGGAAGCCAGAATTTACGCACCATCTTATACACAAGCTCAAGTACCATCCAGGTCAAATTGAGGCTGCTGCT ATTATGGAACATATTTTAGATGGAAGCTCGTATATCAAATATGCTAAACTGCAGCAAGCAGATCCATCGCAGAAGCCTAG GAAAGATCGCTATGCTCTTCAAACTTCTCCTCAATGGCTTGGTCCACAGATTGAAGTCATCCGTTATTCGACCAAATCGA TTGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACTGGGAATAAGGTTTTGAATGGGGGTAATTTC CAAGGCACCCCAATTGGAGTTGCCATGGATAATGTACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATT TACCGAGCTAGTGAATGACTTGTATAATAATGGTTTGCCATCAAATCTCTCAGCTGGTAGAAACCCAAGTCTGGATTATG GTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCAGAACTCCAATATTTAGCAAATCCGGTAACGAGCCACGTG CAGAGTGCTGAACAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCATGGAAAACCGTCGAAGCCGTTGAGAT ATTGAAGCTCATGTCTTCCACATACTTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAAGAAATTTTTAAGA ACACGGTCAGGAATACCATAAGCACGGTTGCAAAGAAGACATTATCCATAGAAGACAAAGAAGAAATCAACCCATTTCGA TTTTGTGAGAAAGATTTACTCAAAGTGGTTGAGAGAGAATATGTATTCTCCTACATTGATGATCCATCCAACGTCATGTA CCCACTGATGCCGAAACTAAAGCAGGTACTTTATGAGCAAGCACACATTAGTGCCATTAATGACAAGAATGTGAGCTTGA CAATCTTTGACAAGATTGGAGCTTTTGAGGATGAACTGAAGAATCTCTTCCCGAAGGAAGTTGAAAGTGCAAGGTTGGCT TATGAGAAGGGCAATCCAGCAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCGCTGTACAAGTTTGTAAGGGAAGA ATTAGGGACAGGGTTGCTGACCGGAGATAAGACTATCTCACCAGATGAGGACTTTGAAAAAGTATTTACAGCCGTGAGAC AAGCAAGGATTGTTGACCCACTTCTGGAATGTCTTGAAGATTGGAATGGAGTTCCCATCCCAATATAA
Protein sequence (LotjaGi1g1v0004200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPVLPLRGTVTASGDLIPLSYIVALLIGRRNSKAVGPSGESLNAKEAFN LAGLNSGFFELNPKEGVALVNGTAVGSGVAAVVLFETNILALLSVVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAA IMEHILDGSSYIKYAKLQQADPSQKPRKDRYALQTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVTGNKVLNGGNF QGTPIGVAMDNVRLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHV QSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTVRNTISTVAKKTLSIEDKEEINPFR FCEKDLLKVVEREYVFSYIDDPSNVMYPLMPKLKQVLYEQAHISAINDKNVSLTIFDKIGAFEDELKNLFPKEVESARLA YEKGNPAIPNRIKECRSYPLYKFVREELGTGLLTGDKTISPDEDFEKVFTAVRQARIVDPLLECLEDWNGVPIPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 103 | 103 | 1.0E-39 | ||
| SUPERFAMILY | 1 | 555 | 555 | 2.67E-201 | ||
| TIGRFAM | 1 | 546 | 546 | 1.2E-257 | ||
| CDD | 1 | 366 | 366 | 1.12026E-156 | ||
| PANTHER | 1 | 555 | 555 | 0.0 | ||
| Pfam | 1 | 369 | 369 | 7.4E-123 | ||
| PANTHER | 1 | 555 | 555 | 0.0 | – | |
| ProSitePatterns | 39 | 55 | 17 | - | ||
| Gene3D | 104 | 545 | 442 | 9.9E-200 | – | |
| Gene3D | 369 | 483 | 115 | 9.9E-200 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0004200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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