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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004200 |
| Transcript ID | LotjaGi1g1v0004200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:767785..770354) extracted from Lotus japonicus Gifu genome v1.2.
CCTGCCAAGATTGACCCGGCCAAAAGTCAAGCACCTACCCATACACAAATTCTCCTCTGCTCGTGCTGTGTTGCTCCTAC CCATTACTCACCAACCAATCAGTGAAGCGCCACCCTCTATTTAAGCTTAAAAAGCCATTGTTTCTCTACAACCTGATCTG GTGATAGTGTATGAACATGGCGACCCAGAAAGCTAACCAAAGTGTGAGTGACACAGACCCTCTGAACTGGGAATCTGCGG CAAATTCACTCAAGGGTAGCTACTTTGACGAAGTGAAACGCATGGTGGCAGATTACCGGAAGCCAGTGATATGTCTAGGT GGGGGGGAGACACTAACTATATCCCAGGTAGCTGCTGTTGCTAACCATAACTTACAAGTTAAGGTTGGCCTCTCAGAGAC AGCAAGGGCAGGAGTTGAGGCCAGCTGCGAGTGGATTATGGAAAACGTTAACAAAGGTACTGCCATTTATGGAGTCACCA CTGGCTTTGGTGCTGCCTCCAACAGACAAACCAACCAAGGCTTGGCTCTTCAGAAAGAGATGGTTAGGTGAGGTTCCACT CTGCATTATAGATAACATATTGCTTTGATATGCTACATGATCCTTCATGTCAAAATTTTACATAATAGTGTCATGTTAAA ATTTGATGTTAACTCTCTCTTCATACCTATTAAATGAGTGAGTGACAACTTATAGACATTTATGAAGAGAAAAAAACACA TCAAGTTTCATGATACAATGTAATATGACATGAGAGGATCATAATCCGCAATTTCATAGACTACATACTAAATATTATGT TGGCTGAACCATTTTTCCTTCCTAAGGTTTTTGAACTGCGCTATATTTGGCTTTGGAGCTGAGTTATCTCATACACTGCC CCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCCGGTATTAGATTTGAAATCT TAGAAGCTATCACCAAACTCCTCAACCATAATGTCACCCCTGTCTTGCCATTACGTGGTACAGTCACGGCTTCTGGTGAT CTTATTCCTCTGTCCTACATTGTTGCATTGCTAATTGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTCCCT CAATGCTAAGGAAGCTTTCAATTTAGCAGGTCTGAATTCTGGGTTCTTTGAGCTGAATCCCAAGGAAGGCGTTGCCCTTG TAAATGGCACAGCCGTTGGATCTGGCGTAGCTGCTGTGGTACTTTTTGAGACAAACATATTAGCTTTATTGTCAGTAGTT CTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACGCACCATCTTATACACAAGCTCAAGTACCATCC AGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCGTATATCAAATATGCTAAACTGCAGCAAG CAGATCCATCGCAGAAGCCTAGGAAAGATCGCTATGCTCTTCAAACTTCTCCTCAATGGCTTGGTCCACAGATTGAAGTC ATCCGTTATTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACTGGGAATAA GGTTTTGAATGGGGGTAATTTCCAAGGCACCCCAATTGGAGTTGCCATGGATAATGTACGTTTAGCTGTTGCTTCAATTG GCAAACTCATCTTTGCCCAATTTACCGAGCTAGTGAATGACTTGTATAATAATGGTTTGCCATCAAATCTCTCAGCTGGT AGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCAGAACTCCAATATTTAGC AAATCCGGTAACGAGCCACGTGCAGAGTGCTGAACAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCATGGA AAACCGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATACTTGGTTGCACTCTGCCAAGCTATTGACTTGAGG CATTTGGAAGAAATTTTTAAGAACACGGTCAGGAATACCATAAGCACGGTTGCAAAGAAGACATTATCCATAGAAGACAA AGAAGAAATCAACCCATTTCGATTTTGTGAGAAAGATTTACTCAAAGTGGTTGAGAGAGAATATGTATTCTCCTACATTG ATGATCCATCCAACGTCATGTACCCACTGATGCCGAAACTAAAGCAGGTACTTTATGAGCAAGCACACATTAGTGCCATT AATGACAAGAATGTGAGCTTGACAATCTTTGACAAGATTGGAGCTTTTGAGGATGAACTGAAGAATCTCTTCCCGAAGGA AGTTGAAAGTGCAAGGTTGGCTTATGAGAAGGGCAATCCAGCAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCGC TGTACAAGTTTGTAAGGGAAGAATTAGGGACAGGGTTGCTGACCGGAGATAAGACTATCTCACCAGATGAGGACTTTGAA AAAGTATTTACAGCCGTGAGACAAGCAAGGATTGTTGACCCACTTCTGGAATGTCTTGAAGATTGGAATGGAGTTCCCAT CCCAATATAA
CDS sequence (LotjaGi1g1v0004200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCAGATTACCGGAAGCCAGTGATATGTCTAGGTGGGGGGGAGACACTAACTATATCCCAGGTAGCTGCTGTTGC TAACCATAACTTACAAGTTAAGGTTGGCCTCTCAGAGACAGCAAGGGCAGGAGTTGAGGCCAGCTGCGAGTGGATTATGG AAAACGTTAACAAAGGTACTGCCATTTATGGAGTCACCACTGGCTTTGGTGCTGCCTCCAACAGACAAACCAACCAAGGC TTGGCTCTTCAGAAAGAGATGGTTAGGTTTTTGAACTGCGCTATATTTGGCTTTGGAGCTGAGTTATCTCATACACTGCC CCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCCGGTATTAGATTTGAAATCT TAGAAGCTATCACCAAACTCCTCAACCATAATGTCACCCCTGTCTTGCCATTACGTGGTACAGTCACGGCTTCTGGTGAT CTTATTCCTCTGTCCTACATTGTTGCATTGCTAATTGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTCCCT CAATGCTAAGGAAGCTTTCAATTTAGCAGGTCTGAATTCTGGGTTCTTTGAGCTGAATCCCAAGGAAGGCGTTGCCCTTG TAAATGGCACAGCCGTTGGATCTGGCGTAGCTGCTGTGGTACTTTTTGAGACAAACATATTAGCTTTATTGTCAGTAGTT CTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACGCACCATCTTATACACAAGCTCAAGTACCATCC AGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCGTATATCAAATATGCTAAACTGCAGCAAG CAGATCCATCGCAGAAGCCTAGGAAAGATCGCTATGCTCTTCAAACTTCTCCTCAATGGCTTGGTCCACAGATTGAAGTC ATCCGTTATTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACTGGGAATAA GGTTTTGAATGGGGGTAATTTCCAAGGCACCCCAATTGGAGTTGCCATGGATAATGTACGTTTAGCTGTTGCTTCAATTG GCAAACTCATCTTTGCCCAATTTACCGAGCTAGTGAATGACTTGTATAATAATGGTTTGCCATCAAATCTCTCAGCTGGT AGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCAGAACTCCAATATTTAGC AAATCCGGTAACGAGCCACGTGCAGAGTGCTGAACAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCATGGA AAACCGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATACTTGGTTGCACTCTGCCAAGCTATTGACTTGAGG CATTTGGAAGAAATTTTTAAGAACACGGTCAGGAATACCATAAGCACGGTTGCAAAGAAGACATTATCCATAGAAGACAA AGAAGAAATCAACCCATTTCGATTTTGTGAGAAAGATTTACTCAAAGTGGTTGAGAGAGAATATGTATTCTCCTACATTG ATGATCCATCCAACGTCATGTACCCACTGATGCCGAAACTAAAGCAGGTACTTTATGAGCAAGCACACATTAGTGCCATT AATGACAAGAATGTGAGCTTGACAATCTTTGACAAGATTGGAGCTTTTGAGGATGAACTGAAGAATCTCTTCCCGAAGGA AGTTGAAAGTGCAAGGTTGGCTTATGAGAAGGGCAATCCAGCAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCGC TGTACAAGTTTGTAAGGGAAGAATTAGGGACAGGGTTGCTGACCGGAGATAAGACTATCTCACCAGATGAGGACTTTGAA AAAGTATTTACAGCCGTGAGACAAGCAAGGATTGTTGACCCACTTCTGGAATGTCTTGAAGATTGGAATGGAGTTCCCAT CCCAATATAA
Protein sequence (LotjaGi1g1v0004200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVADYRKPVICLGGGETLTISQVAAVANHNLQVKVGLSETARAGVEASCEWIMENVNKGTAIYGVTTGFGAASNRQTNQG LALQKEMVRFLNCAIFGFGAELSHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPVLPLRGTVTASGD LIPLSYIVALLIGRRNSKAVGPSGESLNAKEAFNLAGLNSGFFELNPKEGVALVNGTAVGSGVAAVVLFETNILALLSVV LSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYIKYAKLQQADPSQKPRKDRYALQTSPQWLGPQIEV IRYSTKSIEREINSVNDNPLIDVTGNKVLNGGNFQGTPIGVAMDNVRLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAG RNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLR HLEEIFKNTVRNTISTVAKKTLSIEDKEEINPFRFCEKDLLKVVEREYVFSYIDDPSNVMYPLMPKLKQVLYEQAHISAI NDKNVSLTIFDKIGAFEDELKNLFPKEVESARLAYEKGNPAIPNRIKECRSYPLYKFVREELGTGLLTGDKTISPDEDFE KVFTAVRQARIVDPLLECLEDWNGVPIPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 669 | 669 | 0.0 | – | |
| TIGRFAM | 1 | 660 | 660 | 3.3E-300 | ||
| PANTHER | 1 | 669 | 669 | 0.0 | ||
| Gene3D | 1 | 217 | 217 | 4.3E-78 | ||
| SUPERFAMILY | 13 | 669 | 657 | 3.53E-235 | ||
| CDD | 16 | 480 | 465 | 0.0 | ||
| Pfam | 18 | 483 | 466 | 1.6E-147 | ||
| ProSitePatterns | 153 | 169 | 17 | - | ||
| Gene3D | 218 | 659 | 442 | 1.8E-199 | – | |
| Gene3D | 483 | 597 | 115 | 1.8E-199 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0004200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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