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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0018500 |
Transcript ID | LotjaGi1g1v0018500.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Multidrug resistance protein ABC transporter family protein; TAIR: AT3G13080.2 multidrug resistance-associated protein 3; Swiss-Prot: sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3; TrEMBL-Plants: tr|I3T517|I3T517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2276985..2277895) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACTTCTGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGGAGGATCATTAACAGAGTATGTCA AACCCCTAACCTTTCCTTTTTTGCTTTTCTGATTTTTAGAGATATATTTTTGCAGCTTAAATAACTTATAGCGTGTTTGG TTCTACTATGTGAAGCCACATTAACAATTTTGGGAAGAAGCTACGAAGTGTAGCTTCTGTACTTACCATGCTTTGGATTG TGCGTCACCCCACCAATCCAAATATGCTCTTAGTAGTCCCTCTGATCTTGTTAGTACTTTTTAAGCTCTATCTTACTGTC TGTTCTCTTGCAGGCTTCTACAGACCAAAGCGCAGTGGATACAGATATTCCTTATCAAATTGGGTCATTTGCCTTCTCCA TGATCCAGCTGTTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATCCCTGTCATAGCA ATCAGCATTTGGTATCAGGTACTGTTTCGACCTTGTAGGCTTTGATAATAAGGTGGAAGTGTGGCACATATTTCTTCCAT TGCTCCCATTCTTGTCTGGCTAACATATATTAAACTTGTAATCTGCAGCAATATTATTTACCATCAGCCCGGGAACTGTC ACGTTTGGTTGGTGTATGCAAAGCCCCAATCATTCAGCACTTTGCTGAAACAATTTCGGGTACTTCAACCATTAGAAGCT TTGATCAGCAGAGAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGT GCCATGGAATGGTTATGCTTCCGCTTAGATATGCTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTAT TCCACAGGGTATTATAGATCCAGGTACATGA
CDS sequence (LotjaGi1g1v0018500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTTCTGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGGAGGATCATTAACAGAGCTTCTAC AGACCAAAGCGCAGTGGATACAGATATTCCTTATCAAATTGGGTCATTTGCCTTCTCCATGATCCAGCTGTTGGGAATTA TAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATCCCTGTCATAGCAATCAGCATTTGGTATCAGCAA TATTATTTACCATCAGCCCGGGAACTGTCACGTTTGGTTGGTGTATGCAAAGCCCCAATCATTCAGCACTTTGCTGAAAC AATTTCGGGTACTTCAACCATTAGAAGCTTTGATCAGCAGAGAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGT ATTCTCGGCCAAAGTTCAATATTGCTGGTGCCATGGAATGGTTATGCTTCCGCTTAGATATGCTGTCTTCTATCACATTT GCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGTATTATAGATCCAGGTACATGA
Protein sequence (LotjaGi1g1v0018500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFCIFRAPMSFFDSTPSGRIINRASTDQSAVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQ YYLPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQRRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITF AFSLIFLISIPQGIIDPGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 35 | 35 | - | – | |
ProSiteProfiles | 1 | 179 | 179 | 29.443 | ||
PANTHER | 1 | 178 | 178 | 8.2E-105 | – | |
PANTHER | 1 | 178 | 178 | 8.2E-105 | – | |
Gene3D | 4 | 179 | 176 | 4.8E-29 | ||
CDD | 4 | 179 | 176 | 1.02902E-60 | – | |
SUPERFAMILY | 4 | 178 | 175 | 2.09E-37 | ||
Pfam | 5 | 167 | 163 | 2.2E-27 | ||
Phobius | 36 | 57 | 22 | - | – | |
TMHMM | 55 | 77 | 23 | - | – | |
Phobius | 58 | 63 | 6 | - | – | |
Phobius | 64 | 83 | 20 | - | – | |
Phobius | 84 | 153 | 70 | - | – | |
TMHMM | 148 | 170 | 23 | - | – | |
Phobius | 154 | 175 | 22 | - | – | |
Phobius | 176 | 179 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0018500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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