Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0018500.3

Overview

Field Value
Gene ID LotjaGi1g1v0018500
Transcript ID LotjaGi1g1v0018500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Multidrug resistance protein ABC transporter family protein; TAIR: AT3G13080.2 multidrug resistance-associated protein 3; Swiss-Prot: sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3; TrEMBL-Plants: tr|I3T517|I3T517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:2276985..2277895) extracted from Lotus japonicus Gifu genome v1.2.

ATGCACTTCTGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGGAGGATCATTAACAGAGTATGTCA AACCCCTAACCTTTCCTTTTTTGCTTTTCTGATTTTTAGAGATATATTTTTGCAGCTTAAATAACTTATAGCGTGTTTGG TTCTACTATGTGAAGCCACATTAACAATTTTGGGAAGAAGCTACGAAGTGTAGCTTCTGTACTTACCATGCTTTGGATTG TGCGTCACCCCACCAATCCAAATATGCTCTTAGTAGTCCCTCTGATCTTGTTAGTACTTTTTAAGCTCTATCTTACTGTC TGTTCTCTTGCAGGCTTCTACAGACCAAAGCGCAGTGGATACAGATATTCCTTATCAAATTGGGTCATTTGCCTTCTCCA TGATCCAGCTGTTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATCCCTGTCATAGCA ATCAGCATTTGGTATCAGGTACTGTTTCGACCTTGTAGGCTTTGATAATAAGGTGGAAGTGTGGCACATATTTCTTCCAT TGCTCCCATTCTTGTCTGGCTAACATATATTAAACTTGTAATCTGCAGCAATATTATTTACCATCAGCCCGGGAACTGTC ACGTTTGGTTGGTGTATGCAAAGCCCCAATCATTCAGCACTTTGCTGAAACAATTTCGGGTACTTCAACCATTAGAAGCT TTGATCAGCAGAGAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGT GCCATGGAATGGTTATGCTTCCGCTTAGATATGCTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTAT TCCACAGGGTATTATAGATCCAGGTACATGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0018500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACTTCTGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGGAGGATCATTAACAGAGCTTCTAC AGACCAAAGCGCAGTGGATACAGATATTCCTTATCAAATTGGGTCATTTGCCTTCTCCATGATCCAGCTGTTGGGAATTA TAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATCCCTGTCATAGCAATCAGCATTTGGTATCAGCAA TATTATTTACCATCAGCCCGGGAACTGTCACGTTTGGTTGGTGTATGCAAAGCCCCAATCATTCAGCACTTTGCTGAAAC AATTTCGGGTACTTCAACCATTAGAAGCTTTGATCAGCAGAGAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGT ATTCTCGGCCAAAGTTCAATATTGCTGGTGCCATGGAATGGTTATGCTTCCGCTTAGATATGCTGTCTTCTATCACATTT GCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGTATTATAGATCCAGGTACATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0018500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHFCIFRAPMSFFDSTPSGRIINRASTDQSAVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQ YYLPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQRRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITF AFSLIFLISIPQGIIDPGT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 35 35 - –
ProSiteProfiles
PS50929
1 179 179 29.443
IPR011527
PANTHER
PTHR24223
1 178 178 8.2E-105 –
PANTHER
PTHR24223:SF380
1 178 178 8.2E-105 –
Gene3D
G3DSA:1.20.1560.10
4 179 176 4.8E-29
IPR036640
CDD
cd18580
4 179 176 1.02902E-60 –
SUPERFAMILY
SSF90123
4 178 175 2.09E-37
IPR036640
Pfam
PF00664
5 167 163 2.2E-27
IPR011527
Phobius
TRANSMEMBRANE
36 57 22 - –
TMHMM
TMhelix
55 77 23 - –
Phobius
CYTOPLASMIC_DOMAIN
58 63 6 - –
Phobius
TRANSMEMBRANE
64 83 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
84 153 70 - –
TMHMM
TMhelix
148 170 23 - –
Phobius
TRANSMEMBRANE
154 175 22 - –
Phobius
CYTOPLASMIC_DOMAIN
176 179 4 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0042626
Molecular function ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0018500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…