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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025700 |
| Transcript ID | LotjaGi1g1v0025700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3111601..3115197) extracted from Lotus japonicus Gifu genome v1.2.
ACTGCTGCTTCTTTGATGTTCTCATGCTCCACGCCTGTGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGCATG GAGTCCTTTGAAGTCAGTTTCATGTGGGGTTTTTGAAAGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGTGCA AGGCACAGGCTATTCATGTTGAGAGTGCACCCCTTTCATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATTGAA GCTCAGCAGTTTGATAGGGATACTCTCAGTGCCATATTTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTCATC TGGGAGCCAAATGCTGAAGGGGTACCTCATGGCTACCTTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTGAGT CTGCTATGAAAAGATTAGGTGGGGATGTTCTGACAACTGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAGACT CTTGAAGGTGGGGCATTTAAATTGACAATACATAGTTATTTTGTGGGTTTATTTCATTGTCCTGTATGAGATTTATAGCA ACTTTGTATTAGTTTCTCTTTACTCACATAAACTTCTCATGTTAATTGATTTTGGCTTTAGACGTGAGTCATGCACTTAA TCTTCACGTTACTTTACTTTTTGCAGATACTATAAGAACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACTTTG AAAGTGGTGCTGCCAAAAGAGCGGCCGCAACTGCTAACATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCATCCC AGTCAGGTATGAACGAATTTTCGATGATTCTGTTCAATGCTGCAAAAGCCGATGCTGCGCAAAGAACTTCAATTAGATAG GGACATAGGATGATACCTTTTTCCGGCTTATCATATAGTAGAGTTTGTCGCTTAGATTCTTCTGCCGTGCATGTGCTTGT GCTGAATGAGTTTATGTTGGTTTTCTTAGCTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTG TGAGAAGGCAATTAATTAGCGTCACTGGTGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAA TTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGA ATGAGTTTATGTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTGAAA AGGCAATGAATTAACGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAG AGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAG TTTATATTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGCGAAAAGGCA ATGAATTAGCGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGC ACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTAT GTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTGAAAAGGCAATGAA TTAACGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATA TGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATGTTGG TTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGCGAAAAGGCAATGAATTAGC GTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTT GCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTTTTCTTTTTTCTCTCATCGAGACTG CCAAGAATCATGAAACATAATCATTGTATATGGGGTTTTTAATTGTTGTCTGTTATATTGGCTATAAGGATAGAGACTTT TAGAGGGCAGAGCTTTCACCACTTCATCTTCATTTTGTGGAATTGCTTTACTTGCTACCTTCTGACACAAATGTTCTGTA GTGTTACATTGCCTCTGAAACTTTTACACAAAAATCAGACACTTCTACATATTATATCTGAGAAGTTGATGAGATTGAAG GGGTTTATGGTGACTTAGGCTCATACAGCGAAATTTGTTTGTTTATTTACGAGTCATGACTTCAAATTTTCTCGTTTTCT AGCCAATTGTAATAACATAATATAGACTTCTCCACCAAAAAGTACCCTCAAGTATAGAATACTAGATTAGTCTTTTGGTA CATACCTTGTTGTATGTTTTATTTGCAGTTGACAAGATGGTTATGCATATGTTTTTCCTTAGTATTTTCTTGGAGAGCAA GATATTTGTATCGATTGCTGAGCATTCTATAATATTTGTTGATACTAATTTGAATGATAAATGGATGGTACTGTTTTTTA TTCAAAACTCTTGCTTTTTCAAACTTCTCAGGCACTGCTAGATGTCTATACCATTGAAAGAGAGATAGGAAAACTGGACG GAATTAGAGTTGGGCTTGTGGGAGACCTAGCTAATGGGAGGACAGTTCGCTCACTCGCATACTTACTTGCCAAGTACCAG GATGTGAAACTTTATTTTGTCTCTCCTAATGTGGTCAAAATGAAGGTAACTGTAGTAAATACTAGTTATGATTTCATGAA CAGAATTGATGTATGTTTAGATATCCGTTGGCACCAGTGCAAACAAATGTTAGCATTCACTTCGAGGCAAAAAGTGAAAG GAACTCTTTTTTTTTGTTGACATGAAAGTTTGTTCACATTGCACTCAACTGATATCCAAACACAATGTTAGGGACATTTC AGGATATGATGAGTTATGGAGTTTTCTTTTTTGTAGGATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTGGGA AGAAAGTGCTGACTTGATGGAAGTGGCTTCTAAGTGCGACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTGAAG GGAAAATTGATCTTTATGAACAGGCAAGAGGCAAGTATATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACATGCT GTGGTTATGCACCCTCTTCCAAGACTAGATGAAGTAAGAACATCATCACTTGATATCTACACTCTAGTTATGAACATAAG CATTAAGATTAAATAAACTAAATTGGTTTGGTCCTTTAATTTGATGCAGATTGAAGTTAATGTTGATGATGATCCAAGAG CTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATATTAGGATGGCTCTGTTGAAGGTTTTGCTTCTTGGTTGGTGA
CDS sequence (LotjaGi1g1v0025700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCATGCTCCACGCCTGTGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGCATGGAGTCCTTTGAAGTC AGTTTCATGTGGGGTTTTTGAAAGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGTGCAAGGCACAGGCTATTC ATGTTGAGAGTGCACCCCTTTCATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATTGAAGCTCAGCAGTTTGAT AGGGATACTCTCAGTGCCATATTTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTCATCTGGGAGCCAAATGCT GAAGGGGTACCTCATGGCTACCTTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAAAGAT TAGGTGGGGATGTTCTGACAACTGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAGACTCTTGAAGGTGGGGCA TTTAAATTGACAATACATAATACTATAAGAACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACTTTGAAAGTGG TGCTGCCAAAAGAGCGGCCGCAACTGCTAACATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCATCCCAGTCAGG CACTGCTAGATGTCTATACCATTGAAAGAGAGATAGGAAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTAGCT AATGGGAGGACAGTTCGCTCACTCGCATACTTACTTGCCAAGTACCAGGATGTGAAACTTTATTTTGTCTCTCCTAATGT GGTCAAAATGAAGGATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTGGGAAGAAAGTGCTGACTTGATGGAAG TGGCTTCTAAGTGCGACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTGAAGGGAAAATTGATCTTTATGAACAG GCAAGAGGCAAGTATATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACATGCTGTGGTTATGCACCCTCTTCCAAG ACTAGATGAAATTGAAGTTAATGTTGATGATGATCCAAGAGCTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATATTA GGATGGCTCTGTTGAAGGTTTTGCTTCTTGGTTGGTGA
Protein sequence (LotjaGi1g1v0025700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSCSTPVGVSHPKMAAKSLAWSPLKSVSCGVFERSKVLHKGDDGIMCKAQAIHVESAPLSFSSGQKFQLDDVIEAQQFD RDTLSAIFEIAKSMESIKHNSSGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGETLEGGA FKLTIHNTIRTVEGYSDIIVMRHFESGAAKRAAATANIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLA NGRTVRSLAYLLAKYQDVKLYFVSPNVVKMKDDIKEYLTSKGVEWEESADLMEVASKCDVVYQTRIQKERFEGKIDLYEQ ARGKYIVNQDVLNVMQKHAVVMHPLPRLDEIEVNVDDDPRAAYFRQAKNGLYIRMALLKVLLLGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 383 | 342 | 5.8E-189 | – | |
| PANTHER | 42 | 383 | 342 | 5.8E-189 | – | |
| SUPERFAMILY | 68 | 382 | 315 | 9.04E-91 | ||
| Hamap | 70 | 384 | 315 | 33.527 | ||
| TIGRFAM | 72 | 382 | 311 | 3.7E-101 | ||
| Pfam | 73 | 222 | 150 | 2.4E-40 | ||
| Gene3D | 73 | 379 | 307 | 2.7E-107 | ||
| PRINTS | 106 | 128 | 23 | 5.9E-40 | – | |
| ProSitePatterns | 116 | 123 | 8 | - | ||
| PRINTS | 116 | 135 | 20 | 1.7E-26 | ||
| PRINTS | 146 | 155 | 10 | 5.9E-40 | – | |
| PRINTS | 209 | 226 | 18 | 5.9E-40 | – | |
| PRINTS | 210 | 221 | 12 | 1.7E-26 | ||
| Gene3D | 210 | 369 | 160 | 2.7E-107 | ||
| Pfam | 229 | 379 | 151 | 4.7E-32 | ||
| PRINTS | 301 | 310 | 10 | 5.9E-40 | – | |
| PRINTS | 337 | 346 | 10 | 1.7E-26 | ||
| PRINTS | 341 | 346 | 6 | 5.9E-40 | – | |
| PRINTS | 347 | 370 | 24 | 1.7E-26 | ||
| PRINTS | 363 | 377 | 15 | 5.9E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartate carbamoyltransferase activity | Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate. | ||
| Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Amino acid binding | Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. | ||
| Molecular function | Carboxyl- or carbamoyltransferase activity | Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0025700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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