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GO:0006207

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description 'de novo' pyrimidine nucleobase biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
Subterm of

Relationships

The relationship of GO:0006207 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
ISBN

· ISBN: 0716720094

, · pages

Associated Lotus transcripts 22

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0062759.1
– PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1|
GO terms
2
Lj1g3v1276960.2
– Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477159|ref|XP_003608865.1|
GO terms
3
Lj1g3v4225520.1
– PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial-like [Glycine max] gi|356536427|ref|XP_003536739.1|
GO terms
4
Lj1g3v4225520.2
– PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial-like [Glycine max] gi|356536427|ref|XP_003536739.1|
GO terms
4
Lj2g3v3188480.1
– PREDICTED: aspartate carbamoyltransferase 1, chloroplastic-like [Glycine max] gi|356501558|ref|XP_003519591.1|
GO terms
2
Lj3g3v0618170.1
– PREDICTED: UMP/CMP kinase-like isoform X2 [Cicer arietinum] gi|502155651|ref|XP_004510144.1|
GO terms
4
Lj3g3v3751960.1
– PREDICTED: adenylate kinase-like isoform X4 [Cicer arietinum] gi|502146789|ref|XP_004506608.1|
GO terms
4
Lj3g3v3751960.3
– PREDICTED: adenylate kinase-like isoform X4 [Cicer arietinum] gi|502146789|ref|XP_004506608.1|
GO terms
4
LotjaGi1g1v0025700.1
– Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700
GO terms
2
LotjaGi1g1v0025700.2
– Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700
GO terms
2
LotjaGi1g1v0025700.3
– Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700
GO terms
2
LotjaGi1g1v0315900.1
– Carbamoyl-phosphate synthase small chain; TAIR: AT3G27740.1 carbamoyl phosphate synthetase A; Swiss-Prot: sp|Q9LVW7|CARA_ARATH Carbamoyl-phosphate synthase small chain, chloroplastic; TrEMBL-Plants: tr|I3SBA2|I3SBA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315900
GO terms
3
LotjaGi3g1v0073100.1
– Adenylate kinase; TAIR: AT5G26667.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O04905|KCY3_ARATH UMP-CMP kinase 3; TrEMBL-Plants: tr|I3SIG7|I3SIG7_LOTJA UMP-CMP kinase; Found in the gene: LotjaGi3g1v0073100
GO terms
4
LotjaGi3g1v0111900.1
– Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900
GO terms
2
LotjaGi3g1v0111900.2
– Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900
GO terms
2
LotjaGi3g1v0111900.3
– Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900
GO terms
2
LotjaGi3g1v0111900.4
– Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900
GO terms
2
LotjaGi3g1v0320200.1
– Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200
GO terms
2
LotjaGi3g1v0320200.2
– Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200
GO terms
2
LotjaGi3g1v0320200.3
– Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200
GO terms
2
LotjaGi3g1v0320200.5
– Orotidine 5'-phosphate decarboxylase; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42942|UMPS_TOBAC Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|K7M0S3|K7M0S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0320200
GO terms
2
LotjaGi5g1v0353100.1
– Dihydroorotate dehydrogenase (Quinone); TAIR: AT5G23300.1 pyrimidine d; Swiss-Prot: sp|P32746|PYRD_ARATH Dihydroorotate dehydrogenase (quinone), mitochondrial; TrEMBL-Plants: tr|I1LF90|I1LF90_SOYBN Dihydroorotate dehydrogenase (quinone), mitochondrial; Found in the gene: LotjaGi5g1v0353100
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0055114
Biological process Oxidation-reduction process 1 4.55