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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025900 |
| Transcript ID | LotjaGi1g1v0025900.2 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3120892..3126179) extracted from Lotus japonicus Gifu genome v1.2.
TTCATATCCATGGTCAGAGTCAGAGTAACCATTTCAAATTCATCATCAAATTGGAAGCAATCGGAGAGTGGAGAAACGAT GGATCTCGAGTTGGTTGGGCGACACGCGATGTTCTTCGACGACGACGCCATGGCGGCGTTCGTGAACTCGCCGGAAGCTC TGGTTGACTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCCGGTCCCCTTCCTCCCCGCCTCAAG CGCCGCCCTCCTCCTCCCGAACCTGACCTCGATTACGAACGCTATCTCGACCTCCCTTCATCATCCCCTGACCATTACCA ACAACAACAACCACAAGGTAAACCTAATCGTACCGTACACAGCACTTTTTTCCTCTTCACTTTTTCCATTTCGTTTTGTT TTACTATTATTGGAGTTGCTTGATGGAATTGTAGTAGAAGAAATGGGAAATTTGATTGATGATTTTTGTTCTGACTGTTT ATGTTTTGTGTTGCTCTCAGAAGAGAAATTGAAAAAAAAATTGTGAGGGTTGAGAGGTTAACTAGGGTAGAGGAAGTTTG TAAGAAAACTTCGGAAAAGTTTTGACTAGAAAATTGGTTTTGGACTTGATGGAGTTCACCTAGTGGCGATGATGATAAGG CTTGGTTGTTGACTTTTACTTGATGATGTTGCTTCTTAATGCGATGTAGGTAGAATGTTTCCTTACATGACATGATGAGA GGTTTGCTATGAATGAAATGATGTTAGATTGGTTCTCTTTTGTGTATTGTTATACAGAGGACTTCATATATCTTTGTAAT TTATTGTGTGTATAGAGTGAAGGCTTTTAATGAATCACTAGTAATCTATGAAGCACCGATTTCGACACAACACTTACACT TACACCTGCGACACGGCTAACCTCCAAAAAGTAGGACATCGGGACCCTGCATAGTAAGTTAAGAAAACGAGCTCTATGAC AATGAGCTTCATAAAAAGATACTAAAAAACACCGCTTTGTCTAAACAACAGAGCTAATTTATCTAACAGCTTCGCCTCCT TGTTTATTATTGTCATTGAAGTCTAGCCTCTAGTTCATCAAGTGATAAATTAGTAATTTCTTTAATGATTTTTAAAAAAA AATAAATGATGTAAATTCCCTAGAGGTGTCCAGCCAAGAAGAGATATCGGCTCAAGTGTCCGAGCTGCAAATTATTATTT TGTATTTGGACACGGTGAAGAATTGTGTTACAAATGTCATGTTGGTGTTGGAGACCAGCAGAGGTATCCGTGCTTCATAG CTAGTAATTTTATAATATTTGTCCTTAAAATAATCTTTAAACAATTGTGTTCAATTCACTCATCGTTTGGACACACTCTT ATATTTGGTTGAGATATTACTTTAGTTGAGGCAATTAGGCGATGTGCAACGTTGGCTATCAAGTCAAAAAATTTTCTCTC TTTTGTCAGTGGATGTTGGAACAACTTTTTTCCCAACTTCCACCTAAGAATGTTGAGTTCTTTTGTTTGTACAACAACAA TCTCCACATTTGCAGGATGGACTGTAATTTGCTACGGTTCCTGTGTCAGAATGCAAGTAAGGATATTTTCTCCTGGCTTC CGGTTATGTTTAATTTCTTTGGTGTTAGTGTCTTTACCATTCTAGGTGTATGATATTGTTGCTCTTGAGAATTATATGTG ATTCTGATCATGGCTGTCGCCTTTCTGTGTTTGTTTAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTG TTGCATTTTCATATGAAAATTCTAACGTGTCCATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTC CCAGTACCAGAAAACTTACTCCATAACCTGGTGAGTATCCCATCTCTTAAAATATAGTTTGTTGTGTTATTTTCAGATGT TACACATTTAATTGACGTTTCATTGTTTAACCAATGTGATTAGGTGATAATTGTCTAGGGTACATGTGTTATTCTAAGGC TTATGATGTCTAAGTTTCAGATGCTCGGAGCATATATGGAGTTCTTTTGACTCAAGGTAGCCATTCACAGGCACCTTGTT TCCTTTTGATATCATGAGAAGGGGTCATGCAGGTGGGATTAGGATGATAGAAATTCGTTGATTCTTTACCTCTTGAGAGC CAATGGATTGAAAAATATCTTCATAAAGTTCTGTTTCTTGATCTGTATGATTATCCAAGTATATGTGAGGTTTTCTTGTG TTTTTTAGTAAGATCTTTATGTACCTATATATTCTGCTTGTAAACCCCCTTTTCAAAATTATACTTTGTTCTAATATTGA AATTCACATTTGCTGATGAAGAAACCATTTTTATTTGTTTTTCTTTTCCAGCCTCCAAGTGATAAGGTACATCAGATTAT TTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAA CATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCT AACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCT TGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTTGTGACTTTGAAAGAGACAAATGTGAGG GAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCTGAATCATCTTCAAATACTGCCAATAAG GATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGTTATTAAGCGGAATCACTCTATCAGTAC TGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAGCATCTAATGCTGCAAACAAGTCACAAA CTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATA GTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATT TCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAATGCTGACGAGGTGTGTTTCTCAGTTGTAT TTTCCTGCTATCCTTTTTGTAACTATTTTGTTGGGGTTAAGGAGGTATTTTATGCACCAAGTAAATTCAATGAATACTTT AGGACACGTTCGTTTGATGAATTTTAAGGTATTGCTAAATGCATATTTTAGCTGCAACTAACTGATCTTTCTATTTGCTT TCAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACATGAAG AAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAGATGATT ATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATGCAGC ATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACATCAAGTA GTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGTTACC AAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGCAGAA ACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAATGACC TGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGTTAAA GAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTGATGA TTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGTTCCA GATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCATAAA AGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACAAGAG AAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAACACTCAA GTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGCATGTCA GACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGACATAC AAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCTCAAC AAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAGTGAT GTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAAAAGCTTCACAGGGTTGATGGCAACTC TATTGTTTTTCCTCTGTAATATCATGTACTCCATTTTCCCATCAGGCAGAAATCGTTATTGATTTGCTTCTTGATTCCTT TATTTGACTTTGTCTTACCTCGCCAATTGAATAGATTCAGGTAGCAGTCAGGATAATTTTGCGTATCAATTTTTAGTAAT TACTAACACTAATAGGCATTAACATGAGAAGGGGGTTATTTCCCTTTCAATTTTGAACAAACTAACAATAAAGATATGCT CAAGATAGTTGCTTTGGTCTTCATAGTATAAACCCTTTTTCTTTTTCTGTTTCATTTCGTAAGTGTTCTAATTTCAAAAA CTACAAAGTGCCGAATCTATGTATCATTAAAATAGAGTTGTAGAAAAAAAACTAGAAATGGTTAAAATTTTGTTTTCCTC TTTTAAAGTTCACCAAAATTTTCATTTAGTCTCAATTTATGTTTTCAATTAGAGTTGAAGTTAGACTTTTTTTTGTTACA AGTATTCT
CDS sequence (LotjaGi1g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCCTCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGA AATTATTCTGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTA GGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAG GGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGA GAATACTTGTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAG AACAGGCTGAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGA GTCCCTGTTATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTT GGATTCAGCATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAAC CTCCATCTGACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTT GCTGAACAAGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCT TCAAAATGCTGACGAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTG CTGTACATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAA TTCAAGATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGG CATGGATGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCA AGACATCAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCT ATCCCTGTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGAC TAAAGAGCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCAT TGAAAAATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAAT CCTGTGGTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCA TTCTATTGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAA AGTACCGTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTA AGGGATCATAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACG CAAGCACAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGC ATCAACACTCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAA GACAGCATGTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCG AAGCAGACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAG ATAAGTCTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCA GAAATAAGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAA
Protein sequence (LotjaGi1g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPPSDKVHQIISRTATFVRKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKANIDDGDSTVDKNKSK GLDQTGGALSLLGSVYGSGEDEDGTTENTCDFERDKCEGAAVDAAGTSASPETEQAESSSNTANKDGSISKSPVPSLKER VPVIKRNHSISTVKTATAARAKTADDLDSASNAANKSQTYVPSTAKIELPVVEPPSDLKRVIERIVEFVLKNGKQVEAVL AEQDRAHGRFPFLLPSNRYHTYYLKALQNADEGKLPGKDHQKHNSSGRAGDNTAVHEESDDLSCGSMGSDLPNDIDRKEK FKMIIGKSKKDGQDPTPKDCHSQNTVGMDAASAAAILQAATRGIKNPNLDIFTKTSSSSVHGLGGDGGYLSTFHQNLDAP IPVTKAIAETVAIAAAREADSSEAHMTKEQKLKAERLKRAKMFAAMLKSGVGALKNDLPRALSVEPPGSGLSGSDAETGN PVVKEREGSSVPFDVDNSDISKSEEKHSIDDSDKSQKSEEKHAVDDIERRSKRKYRSRSSRHEEEEEEEEEEEEEKREDV RDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQRE DSMSDHEHKHSRRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEVMKSDKSQQASEVERASREPSASLSNANHGP EISDVSDELRAKIRAMLAANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 58 | 57 | 3.53E-17 | ||
| PANTHER | 3 | 630 | 628 | 8.0E-180 | ||
| PANTHER | 3 | 630 | 628 | 8.0E-180 | – | |
| Gene3D | 4 | 60 | 57 | 6.6E-20 | ||
| SMART | 9 | 62 | 54 | 2.4E-16 | ||
| Pfam | 10 | 58 | 49 | 1.6E-12 | ||
| ProSiteProfiles | 11 | 53 | 43 | 14.9 | ||
| MobiDBLite | 122 | 159 | 38 | - | – | |
| MobiDBLite | 128 | 151 | 24 | - | – | |
| SUPERFAMILY | 199 | 267 | 69 | 4.58E-14 | ||
| Gene3D | 214 | 271 | 58 | 7.1E-14 | ||
| SMART | 219 | 272 | 54 | 8.5E-10 | ||
| Pfam | 220 | 267 | 48 | 2.2E-9 | ||
| ProSiteProfiles | 221 | 263 | 43 | 14.441 | ||
| MobiDBLite | 272 | 286 | 15 | - | – | |
| MobiDBLite | 272 | 314 | 43 | - | – | |
| MobiDBLite | 464 | 724 | 261 | - | – | |
| MobiDBLite | 498 | 543 | 46 | - | – | |
| Coils | 532 | 566 | 35 | - | – | |
| MobiDBLite | 563 | 577 | 15 | - | – | |
| PANTHER | 580 | 740 | 161 | 8.0E-180 | ||
| PANTHER | 580 | 740 | 161 | 8.0E-180 | – | |
| MobiDBLite | 598 | 666 | 69 | - | – | |
| MobiDBLite | 677 | 702 | 26 | - | – | |
| MobiDBLite | 703 | 721 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0025900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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