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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025900 |
| Transcript ID | LotjaGi1g1v0025900.1 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3120892..3126179) extracted from Lotus japonicus Gifu genome v1.2.
TTCATATCCATGGTCAGAGTCAGAGTAACCATTTCAAATTCATCATCAAATTGGAAGCAATCGGAGAGTGGAGAAACGAT GGATCTCGAGTTGGTTGGGCGACACGCGATGTTCTTCGACGACGACGCCATGGCGGCGTTCGTGAACTCGCCGGAAGCTC TGGTTGACTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCCGGTCCCCTTCCTCCCCGCCTCAAG CGCCGCCCTCCTCCTCCCGAACCTGACCTCGATTACGAACGCTATCTCGACCTCCCTTCATCATCCCCTGACCATTACCA ACAACAACAACCACAAGGTAAACCTAATCGTACCGTACACAGCACTTTTTTCCTCTTCACTTTTTCCATTTCGTTTTGTT TTACTATTATTGGAGTTGCTTGATGGAATTGTAGTAGAAGAAATGGGAAATTTGATTGATGATTTTTGTTCTGACTGTTT ATGTTTTGTGTTGCTCTCAGAAGAGAAATTGAAAAAAAAATTGTGAGGGTTGAGAGGTTAACTAGGGTAGAGGAAGTTTG TAAGAAAACTTCGGAAAAGTTTTGACTAGAAAATTGGTTTTGGACTTGATGGAGTTCACCTAGTGGCGATGATGATAAGG CTTGGTTGTTGACTTTTACTTGATGATGTTGCTTCTTAATGCGATGTAGGTAGAATGTTTCCTTACATGACATGATGAGA GGTTTGCTATGAATGAAATGATGTTAGATTGGTTCTCTTTTGTGTATTGTTATACAGAGGACTTCATATATCTTTGTAAT TTATTGTGTGTATAGAGTGAAGGCTTTTAATGAATCACTAGTAATCTATGAAGCACCGATTTCGACACAACACTTACACT TACACCTGCGACACGGCTAACCTCCAAAAAGTAGGACATCGGGACCCTGCATAGTAAGTTAAGAAAACGAGCTCTATGAC AATGAGCTTCATAAAAAGATACTAAAAAACACCGCTTTGTCTAAACAACAGAGCTAATTTATCTAACAGCTTCGCCTCCT TGTTTATTATTGTCATTGAAGTCTAGCCTCTAGTTCATCAAGTGATAAATTAGTAATTTCTTTAATGATTTTTAAAAAAA AATAAATGATGTAAATTCCCTAGAGGTGTCCAGCCAAGAAGAGATATCGGCTCAAGTGTCCGAGCTGCAAATTATTATTT TGTATTTGGACACGGTGAAGAATTGTGTTACAAATGTCATGTTGGTGTTGGAGACCAGCAGAGGTATCCGTGCTTCATAG CTAGTAATTTTATAATATTTGTCCTTAAAATAATCTTTAAACAATTGTGTTCAATTCACTCATCGTTTGGACACACTCTT ATATTTGGTTGAGATATTACTTTAGTTGAGGCAATTAGGCGATGTGCAACGTTGGCTATCAAGTCAAAAAATTTTCTCTC TTTTGTCAGTGGATGTTGGAACAACTTTTTTCCCAACTTCCACCTAAGAATGTTGAGTTCTTTTGTTTGTACAACAACAA TCTCCACATTTGCAGGATGGACTGTAATTTGCTACGGTTCCTGTGTCAGAATGCAAGTAAGGATATTTTCTCCTGGCTTC CGGTTATGTTTAATTTCTTTGGTGTTAGTGTCTTTACCATTCTAGGTGTATGATATTGTTGCTCTTGAGAATTATATGTG ATTCTGATCATGGCTGTCGCCTTTCTGTGTTTGTTTAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTG TTGCATTTTCATATGAAAATTCTAACGTGTCCATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTC CCAGTACCAGAAAACTTACTCCATAACCTGGTGAGTATCCCATCTCTTAAAATATAGTTTGTTGTGTTATTTTCAGATGT TACACATTTAATTGACGTTTCATTGTTTAACCAATGTGATTAGGTGATAATTGTCTAGGGTACATGTGTTATTCTAAGGC TTATGATGTCTAAGTTTCAGATGCTCGGAGCATATATGGAGTTCTTTTGACTCAAGGTAGCCATTCACAGGCACCTTGTT TCCTTTTGATATCATGAGAAGGGGTCATGCAGGTGGGATTAGGATGATAGAAATTCGTTGATTCTTTACCTCTTGAGAGC CAATGGATTGAAAAATATCTTCATAAAGTTCTGTTTCTTGATCTGTATGATTATCCAAGTATATGTGAGGTTTTCTTGTG TTTTTTAGTAAGATCTTTATGTACCTATATATTCTGCTTGTAAACCCCCTTTTCAAAATTATACTTTGTTCTAATATTGA AATTCACATTTGCTGATGAAGAAACCATTTTTATTTGTTTTTCTTTTCCAGCCTCCAAGTGATAAGGTACATCAGATTAT TTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAA CATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCT AACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCT TGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTTGTGACTTTGAAAGAGACAAATGTGAGG GAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCTGAATCATCTTCAAATACTGCCAATAAG GATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGTTATTAAGCGGAATCACTCTATCAGTAC TGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAGCATCTAATGCTGCAAACAAGTCACAAA CTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATA GTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATT TCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAATGCTGACGAGGTGTGTTTCTCAGTTGTAT TTTCCTGCTATCCTTTTTGTAACTATTTTGTTGGGGTTAAGGAGGTATTTTATGCACCAAGTAAATTCAATGAATACTTT AGGACACGTTCGTTTGATGAATTTTAAGGTATTGCTAAATGCATATTTTAGCTGCAACTAACTGATCTTTCTATTTGCTT TCAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACATGAAG AAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAGATGATT ATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATGCAGC ATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACATCAAGTA GTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGTTACC AAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGCAGAA ACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAATGACC TGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGTTAAA GAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTGATGA TTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGTTCCA GATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCATAAA AGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACAAGAG AAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAACACTCAA GTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGCATGTCA GACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGACATAC AAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCTCAAC AAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAGTGAT GTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAAAAGCTTCACAGGGTTGATGGCAACTC TATTGTTTTTCCTCTGTAATATCATGTACTCCATTTTCCCATCAGGCAGAAATCGTTATTGATTTGCTTCTTGATTCCTT TATTTGACTTTGTCTTACCTCGCCAATTGAATAGATTCAGGTAGCAGTCAGGATAATTTTGCGTATCAATTTTTAGTAAT TACTAACACTAATAGGCATTAACATGAGAAGGGGGTTATTTCCCTTTCAATTTTGAACAAACTAACAATAAAGATATGCT CAAGATAGTTGCTTTGGTCTTCATAGTATAAACCCTTTTTCTTTTTCTGTTTCATTTCGTAAGTGTTCTAATTTCAAAAA CTACAAAGTGCCGAATCTATGTATCATTAAAATAGAGTTGTAGAAAAAAAACTAGAAATGGTTAAAATTTTGTTTTCCTC TTTTAAAGTTCACCAAAATTTTCATTTAGTCTCAATTTATGTTTTCAATTAGAGTTGAAGTTAGACTTTTTTTTGTTACA AGTATTCT
CDS sequence (LotjaGi1g1v0025900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAACCATTTTTATTTGTTTTTCTTTTCCAGCCTCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAAC GTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGA TGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGT GACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGG ATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTTGTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATG CTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCTGAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCT AAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGTTATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGAC TGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAGCATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTA CTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTA AAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAA TCGATATCATACTTACTATCTAAAAGCTCTTCAAAATGCTGACGAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACA ATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGAT CTACCAAATGATATAGACAGAAAAGAGAAATTCAAGATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCC CAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTA TTAAAAACCCTAATTTAGATATTTTTACCAAGACATCAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTG TCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAG GGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTG CAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGT CTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAA TTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTG TTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAG GAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCATAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACA CACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGG GAGCTAAACATGGCATCTCTGATGATGAGCATCAACACTCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAG CACCGATCTTCAAGACGACGACAAAGAGAAGACAGCATGTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGA GACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAG AGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCT GCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTT GGCGGCTAACTTATAA
Protein sequence (LotjaGi1g1v0025900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKPFLFVFLFQPPSDKVHQIISRTATFVRKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKANIDDG DSTVDKNKSKGLDQTGGALSLLGSVYGSGEDEDGTTENTCDFERDKCEGAAVDAAGTSASPETEQAESSSNTANKDGSIS KSPVPSLKERVPVIKRNHSISTVKTATAARAKTADDLDSASNAANKSQTYVPSTAKIELPVVEPPSDLKRVIERIVEFVL KNGKQVEAVLAEQDRAHGRFPFLLPSNRYHTYYLKALQNADEGKLPGKDHQKHNSSGRAGDNTAVHEESDDLSCGSMGSD LPNDIDRKEKFKMIIGKSKKDGQDPTPKDCHSQNTVGMDAASAAAILQAATRGIKNPNLDIFTKTSSSSVHGLGGDGGYL STFHQNLDAPIPVTKAIAETVAIAAAREADSSEAHMTKEQKLKAERLKRAKMFAAMLKSGVGALKNDLPRALSVEPPGSG LSGSDAETGNPVVKEREGSSVPFDVDNSDISKSEEKHSIDDSDKSQKSEEKHAVDDIERRSKRKYRSRSSRHEEEEEEEE EEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDEHQHSSHHHKYDSSSDEK HRSSRRRQREDSMSDHEHKHSRRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEVMKSDKSQQASEVERASREPS ASLSNANHGPEISDVSDELRAKIRAMLAANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SUPERFAMILY | 4 | 68 | 65 | 1.28E-18 | ||
| Phobius | 5 | 12 | 8 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| PANTHER | 13 | 637 | 625 | 7.1E-180 | – | |
| PANTHER | 13 | 637 | 625 | 7.1E-180 | ||
| Gene3D | 14 | 70 | 57 | 6.7E-20 | ||
| Phobius | 18 | 751 | 734 | - | – | |
| SMART | 19 | 72 | 54 | 2.4E-16 | ||
| Pfam | 20 | 68 | 49 | 1.6E-12 | ||
| ProSiteProfiles | 21 | 63 | 43 | 14.9 | ||
| MobiDBLite | 132 | 169 | 38 | - | – | |
| MobiDBLite | 138 | 161 | 24 | - | – | |
| SUPERFAMILY | 209 | 277 | 69 | 4.58E-14 | ||
| Gene3D | 224 | 281 | 58 | 7.2E-14 | ||
| SMART | 229 | 282 | 54 | 8.5E-10 | ||
| Pfam | 230 | 277 | 48 | 2.3E-9 | ||
| ProSiteProfiles | 231 | 273 | 43 | 14.441 | ||
| MobiDBLite | 282 | 324 | 43 | - | – | |
| MobiDBLite | 282 | 296 | 15 | - | – | |
| MobiDBLite | 474 | 734 | 261 | - | – | |
| MobiDBLite | 508 | 553 | 46 | - | – | |
| Coils | 542 | 576 | 35 | - | – | |
| MobiDBLite | 573 | 587 | 15 | - | – | |
| PANTHER | 589 | 750 | 162 | 7.1E-180 | – | |
| PANTHER | 589 | 750 | 162 | 7.1E-180 | ||
| MobiDBLite | 608 | 676 | 69 | - | – | |
| MobiDBLite | 687 | 712 | 26 | - | – | |
| MobiDBLite | 713 | 731 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0025900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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