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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035967
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0025900.1
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3120892 3126179 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.2
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3120892 3126179 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.3
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|A0A0B2S0T7|A0A0B2S0T7_GLYSO Protein suppressor of white apricot; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3120892 3126179 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.4
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3121134 3126121 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.5
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3121141 3126148 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.6
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|K7KBH2|K7KBH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3121141 3126148 -
3 domain predictions
2 GO terms
LotjaGi1g1v0025900.8
n.a. SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900 LjG1.1_chr1 3121271 3126117 -
3 domain predictions
2 GO terms
LotjaGi1g1v0212200.1
n.a. zinc finger CCCH domain protein; TAIR: AT3G26850.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|A0A0R0KFJ4|A0A0R0KFJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212200 LjG1.1_chr1 46725728 46733207 +
3 domain predictions
2 GO terms
LotjaGi1g1v0212200.2
n.a. zinc finger CCCH domain protein; TAIR: AT3G26850.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|A0A0R0KFJ4|A0A0R0KFJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212200 LjG1.1_chr1 46725743 46733388 +
3 domain predictions
2 GO terms
LotjaGi1g1v0742800.1
n.a. Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800 LjG1.1_chr1 131644814 131649577 +
3 domain predictions
2 GO terms
LotjaGi1g1v0742800.2
n.a. Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800 LjG1.1_chr1 131645244 131648566 +
3 domain predictions
2 GO terms
LotjaGi2g1v0083000.1
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0083000 LjG1.1_chr2 22863844 22883502 +
3 domain predictions
2 GO terms
LotjaGi3g1v0059200.2
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6218684 6228301 -
3 domain predictions
2 GO terms
LotjaGi3g1v0059200.3
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6219332 6228102 -
3 domain predictions
2 GO terms
LotjaGi3g1v0059200.5
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6219425 6227996 -
3 domain predictions
2 GO terms
LotjaGi3g1v0124100.1
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100 LjG1.1_chr3 15156214 15164068 +
3 domain predictions
2 GO terms
LotjaGi3g1v0124100.2
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100 LjG1.1_chr3 15156376 15163693 +
3 domain predictions
2 GO terms
LotjaGi3g1v0421600.1
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600 LjG1.1_chr3 82994282 82998684 -
3 domain predictions
2 GO terms
LotjaGi3g1v0421600.2
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600 LjG1.1_chr3 82994713 82998646 -
3 domain predictions
2 GO terms
LotjaGi3g1v0421600.3
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600 LjG1.1_chr3 82995790 82998345 -
3 domain predictions
2 GO terms
LotjaGi3g1v0421600.4
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600 LjG1.1_chr3 82995790 82998556 -
3 domain predictions
2 GO terms
LotjaGi4g1v0148600.1
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24206377 24228679 +
3 domain predictions
2 GO terms
LotjaGi4g1v0148600.2
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24206915 24227848 +
3 domain predictions
2 GO terms
LotjaGi4g1v0148600.3
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24207213 24227741 +
3 domain predictions
2 GO terms
LotjaGi4g1v0148600.4
n.a. U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 LjG1.1_chr4 24220199 24227848 +
3 domain predictions
2 GO terms
LotjaGi4g1v0261700.1
n.a. G-patch domain-containing protein; TAIR: AT5G23080.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q8GXN9|TGH_ARATH G patch domain-containing protein TGH; TrEMBL-Plants: tr|I1K185|I1K185_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0261700 LjG1.1_chr4 62471507 62483044 -
3 domain predictions
2 GO terms
LotjaGi5g1v0330300.3
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 LjG1.1_chr5 64744412 64747159 -
3 domain predictions
2 GO terms
LotjaGi5g1v0330300.4
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 LjG1.1_chr5 64744591 64747162 -
3 domain predictions
2 GO terms
LotjaGi5g1v0330300.5
n.a. SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 LjG1.1_chr5 64744591 64747447 -
3 domain predictions
2 GO terms