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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0053100 |
| Transcript ID | LotjaGi1g1v0053100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7483661..7486025) extracted from Lotus japonicus Gifu genome v1.2.
GGCCAAAACACTTTCTAGATGATCTAACAAGTAACAACACTTCCTTAGCCTGAGCTGATCCAAAACCAAACAGGGGATTT CGGAGGTCGAATTCAGTTCCAATAATAATGTCTACAGGATCTTTCAGAGAAAATGGAGACGATACCTCCTCCAACCTTCA AGTTGTAATATCATCATCATCAGATCCTATTTCCACACAAACTCAGCAGGAGCCAGCAGTACCTGAGGATGCCAATGTTA ACGCACGGAAGAGTAAGTTACACTTACACACTAGTTGAAACTATTACAGTAGATGACCCATATGTAAGAATTTCTATTTA ATAAGGAATGTGAATTTAAAAATCAGAGATGCACTATATTTAAGTTGATCATTTTTGTTTTCTGCAACTTTAACAACCCG TATATATGAATTACTCGATCGAAGCTCGCTCCAATATGTAGTTGTTGGGTAAAGGACTCTGGAAGGTTTTATATTATATT TCTAAAACAGTAGACAAGAAAAGTTTTTGGTTTACAGGTTCCTTGAAAGGGCGCCTGCATGACTATGCACTCCTAAATTG GTGGTTCAGCGCAAAACCCATTTATGAAGAGTTTCCTGATATGGTGCGCATTCCCTTAACTGCTAGTGGAGATACAGCTC TTCATGTTGCAGTGAGCAGAAACAGCATTGGTTTTGTGGAAGAGTTTGTCAACTTTGAACATGTGACCCAACAAGACCTT GAATTACGAAACGGAAATGGGAACACAGCATTTTGCATAGCTGCAGTTACAGGGAATCGTAAGCTTCTACAAGTTATGAT TCAAAAGAATGAAAACTTGGCATTGATTCATGGGCAAGATGGGATGCTTCCAGTTCACTTGGCTGCTTTAGGTGGCTACC ACGAAATCGTGGAAGATTTGTCCTCTGAGAATCTACTTGAGAAAATGGATGTCAAGGATATACAACAACTCCTTTTCATG GCCATTAACAGCGACATGTATGGTAAGTAAGACTATACGAAACATATATACCATTTTGTAAAATTTAGAAAAGCAATGCT AACAGCTTTATATCACAGATGTGGCAACAAAATTAGTTAAGAAGTATCCAGAGCCTTTGCTCATTGCAAGAGACGATAAA GAAAATCTAACAGCTTTGCATATGTTGGCGCGAAAGCCTCACAACAGTGAAGATGAATTAACACAACTGATTTTGTTTTC AACATTATTGACACAATCAGAAGACTTGCAATTCAATTTTTTCTGGGAGTTGATTACTAAACCTTCAGTGGTACTGTTTG ATGCTGTAAAATCGGGAAACTTTCTTATAGTGAAAACGCTTCTTTTCACGTATCCTGAACTATTAGCAGTAAAGGACCCT AAAAATGAACAGAACATACTGCATATTGCTGTTTTATTTCGACAAAATAGCATCTTTGACTTTATACTAAAGGCGAATCC AAAGCTTTTAATACGGGCAGTTGATGAAGATCGTAACAATATTCTACACTTAGCTGCATGTCAGCAAAAAGAAGCATCAT TAAGTTTGAGACCAGACATTCGAATGCGAAGAGAGCTGGCATGGTTTAAGGTAAATTTAACTTGCTCATTCTTATTATAC TATTCTTCTTTTTCTTTATAGCGAATATATCTAGTAAGGTTTGATCACATAAACCTAAATTTAATTGATCCTAACAAGAG TTGATATGAACATGTAGGAGGTGGAGAAAAGAGTTCCTCCAGAATTAAGAGCAATGAAAAACAAAGATGGCAAAACACCA AATGATATGTTTTATGCAAATCATAGGAAGTTATCGGACGAAGTTAAGGAAACAGCAAAGGGAGTAGCCAACTCTGCTAT GGTTGTGGCGGCACTTGTTGTTACCGTCGCTTTTGCTGCAGCTCTCACTACTCCTGGTGACAAGAACAATGCTTGGTTTT CTGTATTCATCATTACAAATGCAGTTGCATTGTTCACTTCTTCTTTAGCTATTGTCTCTTTCTTGTCAATTTTCACTTCA TCAAGATTCAAAGAAAGTCATTTCGTCATCTCACTATATCCAAACTTGATTATTGGGAAACTTCTCTTGTTTATCTCTGT CATCACTATGGTCATGGCATTTGCTGCAGCTACCTTCTTGATATTTGATCACATAGACAAGGGCCTTGCAAATGTAGTGG CTTCTTTCGCCCTTCTCACAATAATTATGTTTCTTGGGCTTCAGTTAAACCTTTTCGATGGTTTAGTAAACTACTTCGTG TCAAGATATATATGATCATGTACCAACAAGTTTGCTTGTGAAATATATAGTCAAGGTTTTCCTTGAATTTGTGACAATTA TACATGTGTGAGTGTGTAACATTTCTACTTTTGACTGAAAGTTAT
CDS sequence (LotjaGi1g1v0053100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACAGGATCTTTCAGAGAAAATGGAGACGATACCTCCTCCAACCTTCAAGTTGTAATATCATCATCATCAGATCC TATTTCCACACAAACTCAGCAGGAGCCAGCAGTACCTGAGGATGCCAATGTTAACGCACGGAAGAGTTCCTTGAAAGGGC GCCTGCATGACTATGCACTCCTAAATTGGTGGTTCAGCGCAAAACCCATTTATGAAGAGTTTCCTGATATGGTGCGCATT CCCTTAACTGCTAGTGGAGATACAGCTCTTCATGTTGCAGTGAGCAGAAACAGCATTGGTTTTGTGGAAGAGTTTGTCAA CTTTGAACATGTGACCCAACAAGACCTTGAATTACGAAACGGAAATGGGAACACAGCATTTTGCATAGCTGCAGTTACAG GGAATCGTAAGCTTCTACAAGTTATGATTCAAAAGAATGAAAACTTGGCATTGATTCATGGGCAAGATGGGATGCTTCCA GTTCACTTGGCTGCTTTAGGTGGCTACCACGAAATCGTGGAAGATTTGTCCTCTGAGAATCTACTTGAGAAAATGGATGT CAAGGATATACAACAACTCCTTTTCATGGCCATTAACAGCGACATGTATGATGTGGCAACAAAATTAGTTAAGAAGTATC CAGAGCCTTTGCTCATTGCAAGAGACGATAAAGAAAATCTAACAGCTTTGCATATGTTGGCGCGAAAGCCTCACAACAGT GAAGATGAATTAACACAACTGATTTTGTTTTCAACATTATTGACACAATCAGAAGACTTGCAATTCAATTTTTTCTGGGA GTTGATTACTAAACCTTCAGTGGTACTGTTTGATGCTGTAAAATCGGGAAACTTTCTTATAGTGAAAACGCTTCTTTTCA CGTATCCTGAACTATTAGCAGTAAAGGACCCTAAAAATGAACAGAACATACTGCATATTGCTGTTTTATTTCGACAAAAT AGCATCTTTGACTTTATACTAAAGGCGAATCCAAAGCTTTTAATACGGGCAGTTGATGAAGATCGTAACAATATTCTACA CTTAGCTGCATGTCAGCAAAAAGAAGCATCATTAAGTTTGAGACCAGACATTCGAATGCGAAGAGAGCTGGCATGGTTTA AGGAGGTGGAGAAAAGAGTTCCTCCAGAATTAAGAGCAATGAAAAACAAAGATGGCAAAACACCAAATGATATGTTTTAT GCAAATCATAGGAAGTTATCGGACGAAGTTAAGGAAACAGCAAAGGGAGTAGCCAACTCTGCTATGGTTGTGGCGGCACT TGTTGTTACCGTCGCTTTTGCTGCAGCTCTCACTACTCCTGGTGACAAGAACAATGCTTGGTTTTCTGTATTCATCATTA CAAATGCAGTTGCATTGTTCACTTCTTCTTTAGCTATTGTCTCTTTCTTGTCAATTTTCACTTCATCAAGATTCAAAGAA AGTCATTTCGTCATCTCACTATATCCAAACTTGATTATTGGGAAACTTCTCTTGTTTATCTCTGTCATCACTATGGTCAT GGCATTTGCTGCAGCTACCTTCTTGATATTTGATCACATAGACAAGGGCCTTGCAAATGTAGTGGCTTCTTTCGCCCTTC TCACAATAATTATGTTTCTTGGGCTTCAGTTAAACCTTTTCGATGGTTTAGTAAACTACTTCGTGTCAAGATATATATGA
Protein sequence (LotjaGi1g1v0053100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTGSFRENGDDTSSNLQVVISSSSDPISTQTQQEPAVPEDANVNARKSSLKGRLHDYALLNWWFSAKPIYEEFPDMVRI PLTASGDTALHVAVSRNSIGFVEEFVNFEHVTQQDLELRNGNGNTAFCIAAVTGNRKLLQVMIQKNENLALIHGQDGMLP VHLAALGGYHEIVEDLSSENLLEKMDVKDIQQLLFMAINSDMYDVATKLVKKYPEPLLIARDDKENLTALHMLARKPHNS EDELTQLILFSTLLTQSEDLQFNFFWELITKPSVVLFDAVKSGNFLIVKTLLFTYPELLAVKDPKNEQNILHIAVLFRQN SIFDFILKANPKLLIRAVDEDRNNILHLAACQQKEASLSLRPDIRMRRELAWFKEVEKRVPPELRAMKNKDGKTPNDMFY ANHRKLSDEVKETAKGVANSAMVVAALVVTVAFAAALTTPGDKNNAWFSVFIITNAVALFTSSLAIVSFLSIFTSSRFKE SHFVISLYPNLIIGKLLLFISVITMVMAFAAATFLIFDHIDKGLANVVASFALLTIIMFLGLQLNLFDGLVNYFVSRYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 416 | 416 | - | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 54 | 548 | 495 | 9.5E-71 | – | |
| PANTHER | 54 | 548 | 495 | 9.5E-71 | – | |
| SUPERFAMILY | 56 | 351 | 296 | 6.08E-20 | ||
| Gene3D | 81 | 260 | 180 | 3.0E-19 | ||
| ProSiteProfiles | 85 | 350 | 266 | 20.686 | ||
| SMART | 85 | 118 | 34 | 50.0 | ||
| SMART | 122 | 151 | 30 | 0.24 | ||
| SMART | 156 | 187 | 32 | 54.0 | ||
| SMART | 189 | 218 | 30 | 2700.0 | ||
| SMART | 225 | 256 | 32 | 4400.0 | ||
| Gene3D | 272 | 395 | 124 | 2.0E-7 | ||
| SMART | 306 | 335 | 30 | 150.0 | ||
| Pfam | 414 | 515 | 102 | 1.6E-11 | ||
| TMHMM | 416 | 438 | 23 | - | – | |
| Phobius | 417 | 438 | 22 | - | – | |
| Phobius | 439 | 449 | 11 | - | – | |
| Phobius | 450 | 472 | 23 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 473 | 491 | 19 | - | – | |
| Phobius | 492 | 517 | 26 | - | – | |
| TMHMM | 496 | 517 | 22 | - | – | |
| Phobius | 518 | 523 | 6 | - | – | |
| Phobius | 524 | 544 | 21 | - | – | |
| TMHMM | 524 | 546 | 23 | - | – | |
| Phobius | 545 | 559 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0053100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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