Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR026961
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 110 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.320s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0006359.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|358347224|ref|XP_003637659.1| chr0 2431129 2435672 -
2 domain predictions
 –
Lj0g3v0060929.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|358347224|ref|XP_003637659.1| chr0 20353838 20358381 +
2 domain predictions
 –
Lj0g3v0069449.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr0 25102517 25103649 -
2 domain predictions
 –
Lj0g3v0078369.1
n.a. embryogenesis transmembrane protein-like [Oryza sativa Japonica Group] gi|55297356|dbj|BAD69210.1| chr0 30160918 30161615 -
2 domain predictions
 –
Lj0g3v0115939.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr0 50955835 50957836 +
2 domain predictions
 –
Lj0g3v0123289.3
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr0 55276896 55279595 +
2 domain predictions
 –
Lj0g3v0228259.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max] gi|356545932|ref|XP_003541387.1| chr0 117992787 117994042 -
2 domain predictions
 –
Lj0g3v0249959.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cicer arietinum] gi|502082023|ref|XP_004487042.1| chr0 129588382 129592623 -
2 domain predictions
 –
Lj0g3v0271569.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr0 140699913 140700870 -
2 domain predictions
 –
Lj0g3v0299919.1
n.a. PREDICTED: death-associated protein kinase 1-like [Glycine max] gi|356545491|ref|XP_003541175.1| chr0 155802404 155803655 -
2 domain predictions
 –
Lj0g3v0309479.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Solanum lycopersicum] gi|460399061|ref|XP_004245062.1| chr0 161572488 161573092 +
2 domain predictions
 –
Lj0g3v0362609.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356569643|ref|XP_003553008.1| chr0 191246638 191248172 -
2 domain predictions
 –
Lj1g3v0131220.1
n.a. PREDICTED: death-associated protein kinase 1-like [Glycine max] gi|356545491|ref|XP_003541175.1| chr1 1753440 1756028 +
2 domain predictions
 –
Lj1g3v1798860.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357465949|ref|XP_003603259.1| chr1 21790525 21792827 -
2 domain predictions
 –
Lj1g3v4549010.2
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53640187 53643109 +
2 domain predictions
 –
Lj1g3v4549020.1
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53641295 53643109 +
2 domain predictions
 –
Lj1g3v4578470.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357510531|ref|XP_003625554.1| chr1 54153241 54156557 +
2 domain predictions
 –
Lj1g3v4578490.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357510525|ref|XP_003625551.1| chr1 54159742 54163075 +
2 domain predictions
 –
Lj2g3v2002310.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cicer arietinum] gi|502114219|ref|XP_004494898.1| chr2 30273220 30281055 -
2 domain predictions
 –
Lj2g3v2879450.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr2 37497297 37500853 +
2 domain predictions
 –
Lj2g3v2969650.1
n.a. ankyrin repeat family protein [Citrus unshiu] gi|343887311|dbj|BAK61857.1| chr2 38358076 38359208 +
2 domain predictions
 –
Lj2g3v3007360.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr2 38812700 38813307 -
2 domain predictions
 –
Lj2g3v3007460.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr2 38840573 38841417 -
2 domain predictions
 –
Lj3g3v0273600.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357454831|ref|XP_003597696.1| chr3 1629143 1631973 +
2 domain predictions
 –
Lj3g3v0429350.1
n.a. PREDICTED: death-associated protein kinase 1-like [Glycine max] gi|356545491|ref|XP_003541175.1| chr3 4301716 4303808 +
2 domain predictions
 –
Lj3g3v0429350.2
n.a. Ankyrin repeat protein [Medicago truncatula] gi|357517641|ref|XP_003629109.1| chr3 4301716 4305217 +
2 domain predictions
 –
Lj3g3v1933110.1
n.a. Os06g0291800 [Oryza sativa Japonica Group] gi|297724733|ref|NP_001174730.1| chr3 24951212 24952237 -
2 domain predictions
 –
Lj3g3v2532270.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr3 31092272 31093273 -
2 domain predictions
 –
Lj3g3v3132920.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356541266|ref|XP_003539100.1| chr3 39057746 39062369 -
2 domain predictions
 –
Lj4g3v0300480.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3635734 3642228 +
2 domain predictions
 –
Lj4g3v0300480.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3642835 3646326 +
2 domain predictions
 –
Lj4g3v2374870.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr4 32759307 32764147 -
2 domain predictions
 –
Lj4g3v3113080.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cicer arietinum] gi|502138302|ref|XP_004503355.1| chr4 41549859 41553879 +
2 domain predictions
 –
Lj5g3v1170930.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|359473665|ref|XP_003631341.1| chr5 18616748 18629118 +
2 domain predictions
 –
Lj5g3v2288690.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342249 33346004 +
2 domain predictions
 –
Lj5g3v2288700.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342353 33346079 +
2 domain predictions
 –
Lj6g3v0803350.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357494239|ref|XP_003617408.1| chr6 7958344 7961639 -
2 domain predictions
 –
Lj6g3v0920040.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr6 9072940 9078681 -
2 domain predictions
 –
Lj6g3v1371870.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Fragaria vesca subsp]. vesca] gi|470110661|ref|XP_004291592.1| chr6 16274397 16279874 +
2 domain predictions
 –
Lj6g3v1371880.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282599 16286916 +
2 domain predictions
 –
Lj6g3v1371880.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282634 16286916 +
2 domain predictions
 –
Lj6g3v1372100.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16344280 16344859 +
2 domain predictions
 –
Lj6g3v1382370.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16509808 16510538 -
2 domain predictions
 –
Lj6g3v1790940.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20082460 +
2 domain predictions
 –
Lj6g3v1790940.2
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20081556 +
2 domain predictions
 –
Lj6g3v1916090.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr6 21651661 21656478 +
2 domain predictions
 –
Lj6g3v1968130.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22807598 22811621 -
2 domain predictions
 –
LotjaGi1g1v0032800.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151THD2|A0A151THD2_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0032800 LjG1.1_chr1 4189030 4193520 -
2 domain predictions
 –
LotjaGi1g1v0053100.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7475909 7486034 +
2 domain predictions
 –
LotjaGi1g1v0053100.2
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7483661 7486025 +
2 domain predictions
 –