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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105100 |
| Transcript ID | LotjaGi1g1v0105100.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16235121..16239684) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAGATAACGTTTTTATTACGTTTTTCAGTTTTTTTTTTTAATTGTTGTGTTGATTTTGTTTTTTGTTTTGTGAAGGT TTAGCTATGGCGTCGAAACGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTGA GGTTCCTGATCCCTTTGTCCCTCCACCCCTGTATGAAGAAAACTGTGAATTTTTGTAATTTTATCTTTTGATTTTGATCT GTAGCAACTGCACCCCTTTATTAGGTTTTAGATTCAAATTGGATTGATGATTTTAGACTAAACAGATTTTAATTTTTGTT TGGGTTTGTGTGGATTTTTTTAACTAATATGGCAAAATTGTGGGTCTTTGTTAAAATTTGGATGCACTTTAGAGAGAAAG GTGTATAGTTATAATCATTTGATTAGAAAATCAGGGCTAATATTGAAGTAAAGTATGTGCAATTGTTTAACTAGTTATGT AATTTGTTTAAATTTGCTCTATTGGTTTTCCAGTCTACATTTTTCCCTGTTGAGGTGCACCCTTCACTTAGGGAGTGATG GGTTTAGGTATATATATGTAGTGCTCCCATGCCCTGATTGTTTGAGTGATGGGTTTAGGTATATATATGTAGTGCTCCCA TGCCCTGATTGTTTGATTAAGCATATATTTATTTGATAATTAAGTTACTTCATTCATAGGTTATCACTTATAAGCTGTAA CTTTCTTTTTTGGTTGTTTGAAATTAGTTGCAGGGTTCTCTTATTTTTGTATTCTACCAACTGAAATATTTTTTTATATA TCAGGTCCTGTGGCTGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGT TTTCCTGGTTTCGATTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTAATGGATCCTATTTCATTCCTACATT TGTTGCTTGTATCGTTCTTCTGATGCTGTGTTAATGTTGGGGATTGGTTTGCTATACAACCTCTGTTGTTCGACATGTCA TTCTTGGTTTTGTATGTCTGGAGTTCAAACTGCTTTCTAAAGCATTTTTAAAGATGAATGTGACTATGGACTTAGCATTC AGCGTGCTCAATCTTAAGTAGTAGTCGAGGTTTTATTGAGCTAGATTCTTGACAACCTTTGCTCATACTACTCAAACTGT TGCCAGGCTTGTATTGGTGCAATTGCAAACAGGTCACTGTGAGTGCCCTTGACTAGTTCCAGACAATATGAAGGAGGACC CCCTTATTAAATTTACAGTGGGTGTGGTGTAAGTTATGATTATACTTACATCTACTGGAGATGAAAATAGTTTTACAGAT TAAGGGAGAGAAATACCTTTAGTGGGTAACAAGTAACAACAGTGAACTATGGAGGGGCTAAAGGATTTAGAATGCTTGAT TAGCTTCATTTGAAGCAGTGGAATTGTCTTTATTGTTAAAAGCAAAAGGGGGTGTTGTTTGATGTTTTTTTTGTACTAGT TTTTTTTTTCCTTGTTGGTGTTTTCTGGATGGAGTTTCCTGGGAGGGTTTTGGGGTCGTTGTGGTGATTCATTTCTCCTT CTGACATGTTTGTTTTGCGGTTCTATGGGTTTACTTTGTTTTCCTTCAGTTGGTACCTTGTGGTTTGTTTTGGAGGGTAT CTTATCTCTTGCATTTTCACTTCATTTCATATTTAATAATATTTCGTTTTCTATTCAATATATTGATGACAACTGAAGCT TTACCCCATCAGGCTGGGTTGGTCACATAGATCAAATATTGCACATATGTTTTGTCAAAAAACCAAGTCTATTAGTTCAT CTATATCTAAGCTTCACTTAGGGTTTTTCTTGGCCTTGCATTACCTCTAGTAAATTGGTGCTTCTATTATCCTATCCCTC ACATGGCCAAATAACAATCTCAGGTAAAATTCTACCATCTTTTTCCCAATAGATGCTACCTTAGTGTCTTTAATACATTC ATTCTTGATCTTGTCCTGTGTGTCCACTCATTCACCACATTCTGATTTCAGCAGCACTTAGGTATTGATCTTTTTACCAT AAAATATTGCGGGTTCTATGGCTTTATAGTAAAATTTTCCTTTGAGCTAGCCAGCTAGGGAGGCACCTTTAGATCACACA GGTAATACATGAAACATATCTGCATTTCATCCACCTAGCTCAAATGTTATAATTACATCTCCGTCTACACAAAGTTAATT TTTTTTCAAGAAGATGCAGGATTGACATTGGATAACTTTCACATAAAGGGAATTAAGTTTGTGATTCGGCTTTACTGGCA GTCTAGCATTGGGTAGCTTTTATATTTTCTCTAATTTGGTGTGCAGTAGGTAACTTGAGTCTTTAATGTGTATCACTTTT TCATTCTTTCTATGTACTAGGATAGAAATATAACTTATATCCAGCTTTCTACCTGTCTTTAATTGGTTAAAAACTCTCAG TTCATTTAAGGAGAAAATATCTACTAATGGATCCTTACCACTAATATTGTGGTTCTGGAATTACAATTTTTGTTTGCCAA AACTTCTTTATTTTGTTTTCATGTGGGTACATACACGATCTATCTTCCACATGTTTGTGTATTTGAATACCAAGCATTTG AAATAATATTGATTTCTTCATGAACTTGACATAAGAATTTATCCTTAGGAAGAAATATTGGTTTGTTATTGTTTTTATTT ATCAAATGTCCATAGGTTTTTTTGCTTGAAAAAAACCATAGGTAACAATTTCTTTTATGTGAATTGTCATGGATGAAAGT TTAGATATGGTTCTATGGGAGTTTTCAGAACATGGTACGAGTTTGCATGTACTGTATTCCACAACTTGGTCTTATCTCGG GTCGGCTGCACTACCTGGATCAAACAGCACAACATTGTAGTGCTTTATTTATTAAAAAAAAACTATTGAAAATCCATTTG GAATTAGGTCTTTTTCAATGTTTTCCCTTTTAGGCTATATTGCATTTGAAAATAGTTTTATATATAGAATTATGAAGTTG GATTTCATAAGTTACAAAATTAGTTACTTCTATTATGATTCATTTCACTGCCATAGCACAGTTGTATCACCAAGGGAAGT GGAGACTGCATAAAAAAGAATTGTCTTTCTGAATTATTGACTCAAAGGAGACTCTTCTCTGCGGAAGAAAGATGCTACTC TAGTGCTTCTGATCTATTTTTCTTGGGGCATATATCTAGGCTGTAGTTTCCTTCTCCCCGGTTCCTTTGGGCATCCCCCT CTTCTGTTGTCAGCCCATTGCGCATGCTTTTGTGCACTCGCACATTCAGCTCAATTAGTAGAAAATATAGTTGCAAAGAA AGTTAGAATTTATGGTTGCAAAAATTAGGCGTTGCATGTTAATGTTGACAGAGACCCCAATTTCACTGTCTTGCTTGTTA AGTGAGATAAATCTTCTTTTCTTCCTTTGTTTTTTTATTTTTGCCTTCTTTTTATTGATTTACTATTATTCCCAGTTGTA ATTTGATATGCAATGCACCCAAATTCCAATAGGACTAACTAGCTTTATCCTGTCAAATTACTTGTTGGTACTATTTTGAA CTTCTTGTGAGACTCACGTATAAAATTAACATAATTAATATTCCAAACAACTGCAGGTGGCATTTAGGACTAAGGTATTT CACCCGAACATCAACAGTAATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAA GGTTTGATTTCACTTTGCTTGTTTATCTTTGATAACATGATTTTTAATAATTTCGCACGAGTTTTGAGCTTTTTTTTATC CTTGCTGATATTGCTGAACGTAATTTCTGTATTATGATTTGATATCCTGCCCGTTATGATTTATGAGGCAAATCACTGTA ATTTCTGTATTTTCTTTTGGGCTTGTGACTGCTGAATTTAAGAAGTATAAGGGTGGTTGTGCCTTTGGTGCTTAAATGTT GGGGAGTTGAAGCTTATATTTGGATTAAGAAACAGGGCTTATTTGAGTAAAAATTATCTACAATTATTTTTTTTCTTGGG GATTTTTTAAACATCTTCTAATTCTAGGAGACCCCCACCAAAAAGCTTTGTTTATTGCTGACGTTTTCAACCATTGAAAG TATTGGATGTACATTTTAGTGTAGTAAAAATAGTCCAGGGATCTGCAATATAGCTTTCTCTTAACTTCAGTTTGAGCGTC TGTTCAAATCTCTCTAACTTTTGATCTGTTAACTTGAGCAATAGTTCACGTCACCTTGATCAGCCTGATTAGACAAATCA ATTTTTAGTCATTTAATAACTGAAATCTGTTTATTTTTTGGGATATTGTTGTGGTGTATGCTTTAAGCCCTTGGAGAAAA CTAATTCTACTATTTTTCAGGTCCTTCTGTCAATTTGCTCCTTGTTGACGGACCCCAACCCCGATGATCCTCTTGTGCCT GAAATTGCGCACATGTACAAGACTGACCGGGCCAAGTATGAAGCTACCGCTCGCAGCTGGACACAGAAGTATGCCATGGG ATGA
CDS sequence (LotjaGi1g1v0105100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGAAACGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTCCTGTGGC TGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCTGGTTTCGA TTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTGGCATTTAGGACTAAGGTATTTCACCCGAACATCAACAGT AATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGGTCCTTCTGTCAATTTG CTCCTTGTTGACGGACCCCAACCCCGATGATCCTCTTGTGCCTGAAATTGCGCACATGTACAAGACTGACCGGGCCAAGT ATGAAGCTACCGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence (LotjaGi1g1v0105100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 3.5E-99 | – | |
| PANTHER | 1 | 147 | 147 | 3.5E-99 | – | |
| Gene3D | 1 | 148 | 148 | 2.0E-75 | ||
| SUPERFAMILY | 2 | 147 | 146 | 1.22E-66 | ||
| CDD | 3 | 142 | 140 | 4.89471E-76 | ||
| SMART | 4 | 147 | 144 | 5.5E-81 | – | |
| ProSiteProfiles | 4 | 136 | 133 | 48.743 | ||
| Pfam | 5 | 141 | 137 | 6.0E-54 | ||
| ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0105100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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