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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105100 |
| Transcript ID | LotjaGi1g1v0105100.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16235207..16238968) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCGAAACGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTGAGGTTCC TGATCCCTTTGTCCCTCCACCCCTGTATGAAGAAAACTGTGAATTTTTGTAATTTTATCTTTTGATTTTGATCTGTAGCA ACTGCACCCCTTTATTAGGTTTTAGATTCAAATTGGATTGATGATTTTAGACTAAACAGATTTTAATTTTTGTTTGGGTT TGTGTGGATTTTTTTAACTAATATGGCAAAATTGTGGGTCTTTGTTAAAATTTGGATGCACTTTAGAGAGAAAGGTGTAT AGTTATAATCATTTGATTAGAAAATCAGGGCTAATATTGAAGTAAAGTATGTGCAATTGTTTAACTAGTTATGTAATTTG TTTAAATTTGCTCTATTGGTTTTCCAGTCTACATTTTTCCCTGTTGAGGTGCACCCTTCACTTAGGGAGTGATGGGTTTA GGTATATATATGTAGTGCTCCCATGCCCTGATTGTTTGAGTGATGGGTTTAGGTATATATATGTAGTGCTCCCATGCCCT GATTGTTTGATTAAGCATATATTTATTTGATAATTAAGTTACTTCATTCATAGGTTATCACTTATAAGCTGTAACTTTCT TTTTTGGTTGTTTGAAATTAGTTGCAGGGTTCTCTTATTTTTGTATTCTACCAACTGAAATATTTTTTTATATATCAGGT CCTGTGGCTGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCT GGTTTCGATTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTAATGGATCCTATTTCATTCCTACATTTGTTGC TTGTATCGTTCTTCTGATGCTGTGTTAATGTTGGGGATTGGTTTGCTATACAACCTCTGTTGTTCGACATGTCATTCTTG GTTTTGTATGTCTGGAGTTCAAACTGCTTTCTAAAGCATTTTTAAAGATGAATGTGACTATGGACTTAGCATTCAGCGTG CTCAATCTTAAGTAGTAGTCGAGGTTTTATTGAGCTAGATTCTTGACAACCTTTGCTCATACTACTCAAACTGTTGCCAG GCTTGTATTGGTGCAATTGCAAACAGGTCACTGTGAGTGCCCTTGACTAGTTCCAGACAATATGAAGGAGGACCCCCTTA TTAAATTTACAGTGGGTGTGGTGTAAGTTATGATTATACTTACATCTACTGGAGATGAAAATAGTTTTACAGATTAAGGG AGAGAAATACCTTTAGTGGGTAACAAGTAACAACAGTGAACTATGGAGGGGCTAAAGGATTTAGAATGCTTGATTAGCTT CATTTGAAGCAGTGGAATTGTCTTTATTGTTAAAAGCAAAAGGGGGTGTTGTTTGATGTTTTTTTTGTACTAGTTTTTTT TTTCCTTGTTGGTGTTTTCTGGATGGAGTTTCCTGGGAGGGTTTTGGGGTCGTTGTGGTGATTCATTTCTCCTTCTGACA TGTTTGTTTTGCGGTTCTATGGGTTTACTTTGTTTTCCTTCAGTTGGTACCTTGTGGTTTGTTTTGGAGGGTATCTTATC TCTTGCATTTTCACTTCATTTCATATTTAATAATATTTCGTTTTCTATTCAATATATTGATGACAACTGAAGCTTTACCC CATCAGGCTGGGTTGGTCACATAGATCAAATATTGCACATATGTTTTGTCAAAAAACCAAGTCTATTAGTTCATCTATAT CTAAGCTTCACTTAGGGTTTTTCTTGGCCTTGCATTACCTCTAGTAAATTGGTGCTTCTATTATCCTATCCCTCACATGG CCAAATAACAATCTCAGGTAAAATTCTACCATCTTTTTCCCAATAGATGCTACCTTAGTGTCTTTAATACATTCATTCTT GATCTTGTCCTGTGTGTCCACTCATTCACCACATTCTGATTTCAGCAGCACTTAGGTATTGATCTTTTTACCATAAAATA TTGCGGGTTCTATGGCTTTATAGTAAAATTTTCCTTTGAGCTAGCCAGCTAGGGAGGCACCTTTAGATCACACAGGTAAT ACATGAAACATATCTGCATTTCATCCACCTAGCTCAAATGTTATAATTACATCTCCGTCTACACAAAGTTAATTTTTTTT CAAGAAGATGCAGGATTGACATTGGATAACTTTCACATAAAGGGAATTAAGTTTGTGATTCGGCTTTACTGGCAGTCTAG CATTGGGTAGCTTTTATATTTTCTCTAATTTGGTGTGCAGTAGGTAACTTGAGTCTTTAATGTGTATCACTTTTTCATTC TTTCTATGTACTAGGATAGAAATATAACTTATATCCAGCTTTCTACCTGTCTTTAATTGGTTAAAAACTCTCAGTTCATT TAAGGAGAAAATATCTACTAATGGATCCTTACCACTAATATTGTGGTTCTGGAATTACAATTTTTGTTTGCCAAAACTTC TTTATTTTGTTTTCATGTGGGTACATACACGATCTATCTTCCACATGTTTGTGTATTTGAATACCAAGCATTTGAAATAA TATTGATTTCTTCATGAACTTGACATAAGAATTTATCCTTAGGAAGAAATATTGGTTTGTTATTGTTTTTATTTATCAAA TGTCCATAGGTTTTTTTGCTTGAAAAAAACCATAGGTAACAATTTCTTTTATGTGAATTGTCATGGATGAAAGTTTAGAT ATGGTTCTATGGGAGTTTTCAGAACATGGTACGAGTTTGCATGTACTGTATTCCACAACTTGGTCTTATCTCGGGTCGGC TGCACTACCTGGATCAAACAGCACAACATTGTAGTGCTTTATTTATTAAAAAAAAACTATTGAAAATCCATTTGGAATTA GGTCTTTTTCAATGTTTTCCCTTTTAGGCTATATTGCATTTGAAAATAGTTTTATATATAGAATTATGAAGTTGGATTTC ATAAGTTACAAAATTAGTTACTTCTATTATGATTCATTTCACTGCCATAGCACAGTTGTATCACCAAGGGAAGTGGAGAC TGCATAAAAAAGAATTGTCTTTCTGAATTATTGACTCAAAGGAGACTCTTCTCTGCGGAAGAAAGATGCTACTCTAGTGC TTCTGATCTATTTTTCTTGGGGCATATATCTAGGCTGTAGTTTCCTTCTCCCCGGTTCCTTTGGGCATCCCCCTCTTCTG TTGTCAGCCCATTGCGCATGCTTTTGTGCACTCGCACATTCAGCTCAATTAGTAGAAAATATAGTTGCAAAGAAAGTTAG AATTTATGGTTGCAAAAATTAGGCGTTGCATGTTAATGTTGACAGAGACCCCAATTTCACTGTCTTGCTTGTTAAGTGAG ATAAATCTTCTTTTCTTCCTTTGTTTTTTTATTTTTGCCTTCTTTTTATTGATTTACTATTATTCCCAGTTGTAATTTGA TATGCAATGCACCCAAATTCCAATAGGACTAACTAGCTTTATCCTGTCAAATTACTTGTTGGTACTATTTTGAACTTCTT GTGAGACTCACGTATAAAATTAACATAATTAATATTCCAAACAACTGCAGGTGGCATTTAGGACTAAGGTATTTCACCCG AACATCAACAGTAATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGGTTTG ATTTCACTTTGCTTGTTTATCTTTGATAACATGATTTTTAATAATTTCGCACGAGTTTTGAGCTTTTTTTTATCCTTGCT GA
CDS sequence (LotjaGi1g1v0105100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGAAACGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTCCTGTGGC TGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCTGGTTTCGA TTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTGGCATTTAGGACTAAGGTATTTCACCCGAACATCAACAGT AATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGTTTTGA
Protein sequence (LotjaGi1g1v0105100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 101 | 101 | 1.8E-68 | – | |
| PANTHER | 1 | 101 | 101 | 1.8E-68 | – | |
| Gene3D | 1 | 102 | 102 | 6.6E-51 | ||
| SUPERFAMILY | 2 | 101 | 100 | 2.88E-47 | ||
| CDD | 3 | 101 | 99 | 1.26513E-54 | ||
| SMART | 4 | 101 | 98 | 7.0E-33 | – | |
| ProSiteProfiles | 4 | 102 | 99 | 38.076 | ||
| Pfam | 5 | 101 | 97 | 2.4E-39 | ||
| ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0105100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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