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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0123300 |
| Transcript ID | LotjaGi1g1v0123300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A151U9Y9|A0A151U9Y9_CAJCA Myb-like protein J; Found in the gene: LotjaGi1g1v0123300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19534884..19538910) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGAATGCCCAACAACTGAGAAACAAACATCATTTTCTATATAATAAGAGGGAACTTTTGCTGTCACTGCAACAAGT ACCCACACACACACACATTATATCCAATCACAGCTCACCAGCTTTTCATAACTTTCTTTTTCTTGGTGGTTCCTCTTTGT TGGAAAAACTTAGCAATCTTTGTTTAGATTCATTTCTCCAAGCCTGGTTACTTGCTTTTCATCACCTTGCATATAATAGC TCTTTCCTATTTTGGGATCCAATCTTTTTCTTTTCTGTGCTTAATTGTTTTTCTTTTTTATCATTATTTCTTCTCTTTTC TTTGTTGCTCAGACAGGGAAAAGGAAGAAAGAACAGTTTTTTTTTTGAACCAGCTTTTCTGTACCTTCACCTGCTCATAA ATTCTTAGCTCTCTCTGCTGTTTCCTAATTTGGTTTGCACATTCATTGTGTTCAGTTCCTCTCCATCTATTTTCTTTCCC AATTGGGGTTGTCTTGTTTTTCTCTATCCCAGTTCCAGTTTATTGAGTTTAGATCTTACAAGTGTTTCAGTGTTATCTTA TTAGACCAATTAGATAACAGATAAAAGTCTTTCAATCTTCATTCAATATCAATTTGGAGCATTCTCTCTGAATTTTCTGT CAAGTGGGTCTTTTCTAGATTCTTGAAAAGTATTCTATCATAAAAGGGTATTCTGATTCCCTTCCAAATGCTTGTGAATT TGTCCCTGAGAAAATTGTTCTGGTAAAACCTCCACCTCTGCTCTCATTTTTCTTTTCTCTCTGCTCTATCTATCTTCCTC TGTTTTTCCTCTGTTTCCTTATCAAGTTCAAGTTTTTCCTGTGAATTCCTTGAGCTTACAACCATAATCACTGGTCTATT GGCTCAAATTTGATTCTATGCAGCAATAGCCTGTGCTTGTGAATTGATGCAATGAAGTGGGAAATGGAAATCCTCTCTCC TGCACCTTTTTCACCCAACTCCAGTTGGTGTGTGGAAGATAACAATAGGAGCACAAGATGGACTTCTGCAGAGAACAAGC TGTTTGAAAATGCCCTGGCAGTGTATGATAAGGACATGCCGGATCGTTGGCACCGAGTGGCTGAAATGATTCCAGGGAAG ACAGTTGAGGATGTGATCAGGCAGTACCAGGAGTTAGAAGTAGATGTTTGCAATATAGAAGCTGGTTTGGTCCCAGTTCC TGGATATACCACTCCAATCTCACCCTTCACCTTAGATTGGGTGAACACTCCAGGGTATGATGGCTTCAAAGGAAGTGGAA AGAGATCTTCCTCAGTTAGAACTCCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAACACAAGTAAGTT TTTGCCTTTTGCATTTCTTTTCCAACTTATTATGTATATGTAGTTTTAACAGTTTATAAAGTTTTTCATATATGATATTA TGATCAGTTGGTAAATGTTTGAATCAGCTTAGTCAATTCCAGCACCTAGACGTTACTCATATAAGTTTCTCTCTACAATT GATTTTGCTTTCAGAATTGTAGATAGATATCCAAACATGCACATAATTGGTGGGTGGATTTTGAAGTTAATTTTAACCTA GAAGGGTAGGAACAATAATTCTGTGTAGATATTAAAGGATTGGATACATCAGATTGGTAGGAAGGTCTTTTAGCTTTTAT GACATAGCTATAGGTTGTTTGTTAAGTCAAATACATTTGGTTACTCTCTATTTTAGTATTGGAGTTTTAAACTTTGTTTT GATATTTCCTTCCAGATTGTTTCTACTGGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGGAACATTTCGCGCAATTTCG TCATCACGCGAACCCCAACTCAGGTGGCTAGCCATGCTCAGAAATACTTCATCAGACAACTCTCAGGAGGCAAAGATAAG AGGAGGGCTAGCATCCATGACATAACAACAGTTAATCTCTCAGAAACCACCAACAATTCTTCTCCAGAAGACACCAATAG ATCCACTTCACCACAACATTCCATGATGCTCTCGCACCAGCACCAGTATCAGCAGCAGCCAAATTCTACTCCTATTACAC CCAGATCCCATTTTCAGTGGAACAATCAGCCGAATTCGGGAGCAGCAATGAATTTCAATCCTGCACATGAAAAAGTTTTC ATGTCTCCACATGGTGTTAACTCCTATGGAGTTAGTATGCAGGGTCAAAATCTGCACAAGGGTGCTCTTCATGAGTCTTC TTACTTAGGACCTCTGTCACAGAATATGGTTTTCCAAGGGCAACAGTCTTCCCAACAATATTCCCATGCATAAATGGGTA GAAACAGAATCTTTGTTTTATGCAGTAGTGCAGTGTTTGTGCTTTTTCCCAATTTCTATGTGAATATCTTACATTAGGAT TTTATTAAGTCATTGGTATATGAACTTGAAGGAAGGTGCATGCATTTGTTTCTTCCATGGTAAAAAAAAACTTCCTAAAA GGTGAAAGCCTCCGAGGCAAGCAAGTTCCCAATGTTGGGTCTGGGGTTGGTTTTTTCTATGTTGTTGCCTTGTTGGAGAA TAATTGGTTTCAAGCCAGGTTTATAATGGAAAATGTCAAGCTCACTTTAAATTTGAAAAGCTGCAAGGCACATGTGTATC TGGAGGATACCGGTACTAATGATTATTTGATGCCAAATATCATTGGGGAAGATATACATTATTTGATAACTTGGCATTGA TTCTTCAAAGGTGAAATTAAGATGGTACTGTGCATTAGTAGACCAACCCTCTGAGCTGCTTAGTGAAAGACCAAAAGGAC AGTACTAAGATTAGTATTTTCACAAAAGTTTGAAAGTGCAGCACATGCTATGCAACTGTAAAGTTGTCTATTTTATTTTG AGGGGGTGCATCACAAGTGTTCTCCATGACAGTTAGTCCTATACTCCTATTAGAGCCAAAAACATCTACATCATAGTCGG GCAAGCTCTTCCACTATGGTGTTTTCCATTCACAAGACTCGAACTTCAGATATTGTTTAAGGAGAATCAGACATGTATCA CCTGAACCAACCGAACCATTATCTTGTTGTAGAGTGTAAAGTTGTCTATGCCAATAAAAAGTTTATACAGGCAACTTTTC AAAAGTAAATGTCTTTGAAACCTGATCTCTTTTATGTAAATTCCATAACTTCATGGAGATCTTGTGATTAAGATACAAGG AGTCAAGTAATGAGATTAATAAAACAATAAAGACTGGTGCCCGCTAGGGTGGACAACTTTGAAATTGGTCCACCCATGGA CCAAGGGGTTCTTTAGTAATTTACAACAGATAAAAAAAAATTAAACCCTAAAATTTTCACCCCTTCACCCACTCTAGTCG TTTTCACCATCTTCCTCTCCTCTCTGATCTCTTCTGCTCTCCACCACCACCACCTTCTTCTTTTTCCTCTTCTCCGGCCA TCTCTGCGGCTCTCGTCTCTCGGTCTCTTCTTCTCTTCACTTGTCATCCTCTCCGCCGCCATCACTTTCTTCCTTTTCGT TTCTGCACTTCTCCGGCCACCACCTTCGCCTCTTCTTCTTCTTCGACCCTCTCTTTTCTACACCCAACCTCCTCCGCCCC TCTCCGACCCTTCAATCTCCCTTAAATCATCAAAAACCTCACCTTTCTCCCTGAAATCCGGCATCCCCATCACTTCCCGT CATCAACTTCATCAGATCGGAGCAAAGGTGCTTCCTTTTCCACCAGATCGGACCAAAGGTGGTTCATTTTCTACTTGATC GGAGGAAATAAAGATCTTTTTCACACATGCAATCGATTTGAGGTATGCTTTTGTAGATTGGAGCAATACTGCAAGGTTGG AGCTTCTCAATCAAGACCAAGCTTCTGTAATTTTTTTTTATGTTTTTTTTTATGTAATATTGCAAGAAATTCCCTCTTCT GTTCTGCAGTTTTTGTGTTTTTTTCTGTAATATTTAAAAAATTTATAAATTCGTAATAAATTTTATGACTATTCAATGCA AAGATGTTGAGAAAGTGAGAATGACAG
CDS sequence (LotjaGi1g1v0123300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGGAAATGGAAATCCTCTCTCCTGCACCTTTTTCACCCAACTCCAGTTGGTGTGTGGAAGATAACAATAGGAG CACAAGATGGACTTCTGCAGAGAACAAGCTGTTTGAAAATGCCCTGGCAGTGTATGATAAGGACATGCCGGATCGTTGGC ACCGAGTGGCTGAAATGATTCCAGGGAAGACAGTTGAGGATGTGATCAGGCAGTACCAGGAGTTAGAAGTAGATGTTTGC AATATAGAAGCTGGTTTGGTCCCAGTTCCTGGATATACCACTCCAATCTCACCCTTCACCTTAGATTGGGTGAACACTCC AGGGTATGATGGCTTCAAAGGAAGTGGAAAGAGATCTTCCTCAGTTAGAACTCCTGAGCAGGAAAGGAAGAAAGGAGTGC CATGGACTGAAGAAGAACACAAATTGTTTCTACTGGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGGAACATTTCGCGC AATTTCGTCATCACGCGAACCCCAACTCAGGTGGCTAGCCATGCTCAGAAATACTTCATCAGACAACTCTCAGGAGGCAA AGATAAGAGGAGGGCTAGCATCCATGACATAACAACAGTTAATCTCTCAGAAACCACCAACAATTCTTCTCCAGAAGACA CCAATAGATCCACTTCACCACAACATTCCATGATGCTCTCGCACCAGCACCAGTATCAGCAGCAGCCAAATTCTACTCCT ATTACACCCAGATCCCATTTTCAGTGGAACAATCAGCCGAATTCGGGAGCAGCAATGAATTTCAATCCTGCACATGAAAA AGTTTTCATGTCTCCACATGGTGTTAACTCCTATGGAGTTAGTATGCAGGGTCAAAATCTGCACAAGGGTGCTCTTCATG AGTCTTCTTACTTAGGACCTCTGTCACAGAATATGGTTTTCCAAGGGCAACAGTCTTCCCAACAATATTCCCATGCATAA
Protein sequence (LotjaGi1g1v0123300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWEMEILSPAPFSPNSSWCVEDNNRSTRWTSAENKLFENALAVYDKDMPDRWHRVAEMIPGKTVEDVIRQYQELEVDVC NIEAGLVPVPGYTTPISPFTLDWVNTPGYDGFKGSGKRSSSVRTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISR NFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTNNSSPEDTNRSTSPQHSMMLSHQHQYQQQPNSTP ITPRSHFQWNNQPNSGAAMNFNPAHEKVFMSPHGVNSYGVSMQGQNLHKGALHESSYLGPLSQNMVFQGQQSSQQYSHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 310 | 305 | 2.1E-158 | – | |
| PANTHER | 6 | 310 | 305 | 2.1E-158 | ||
| Gene3D | 21 | 89 | 69 | 1.3E-19 | – | |
| ProSiteProfiles | 25 | 80 | 56 | 9.127 | ||
| SMART | 26 | 78 | 53 | 1.4E-7 | ||
| SUPERFAMILY | 28 | 82 | 55 | 1.88E-10 | ||
| Pfam | 29 | 75 | 47 | 5.3E-6 | ||
| CDD | 29 | 75 | 47 | 9.9604E-8 | ||
| MobiDBLite | 113 | 133 | 21 | - | – | |
| ProSiteProfiles | 127 | 183 | 57 | 20.486 | ||
| SUPERFAMILY | 128 | 182 | 55 | 8.28E-17 | ||
| TIGRFAM | 130 | 182 | 53 | 1.6E-17 | ||
| SMART | 131 | 181 | 51 | 5.3E-13 | ||
| Gene3D | 133 | 183 | 51 | 1.1E-17 | – | |
| Pfam | 134 | 178 | 45 | 1.7E-12 | ||
| CDD | 134 | 179 | 46 | 1.98481E-11 | ||
| MobiDBLite | 200 | 240 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0123300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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