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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0177300 |
| Transcript ID | LotjaGi1g1v0177300.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34046580..34048562) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGTTTGGTGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTT TGATGAACTTGACTCAATTGCAACCCAGGTATTAATTAATTATACTAAACTCTATGAACATTAATTTGTTCATGACTCAA TGGATGCTAGTTGTTAGTCTTTACTTATTCCGTAGAATAAATTTTTAAATTCAAAAGCTACTCACAAAAGTTTCTTCTCA GAATTGATTCTGGCTCCAGAACCATGATTTCCAAACATGCACTTAACATTTCCATTCTTGTGCAGCGAGGCAGTTCTGTA GGGGATGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGT TTTCATCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTT ACATTCCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTT GACCTGGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATA TGCCATCAGAGAAGATATTGAAAAGGTATGATATGATGGGAATGGGATGCACATGTGCAAATGCTTACATGTTTGGTTTT CTCACCGTTTAAGCTACAAGAGTAGCTTTTTTCAAAAGGGGTTTGGAGACCATGGGAAGCCAAACATGCTATATGTTGTA AGGGCTTTACCTTGTGTAGTCATGGATCATAATTGTTTTCTGAAAGTTCTGGATATGCCTTTTAAGTTTTCTAAAGTCCA AGTCACTAAGTATGCATTTGGGTGCGCATTTGTCAAATGTGAATTTGAAAGAACTGAAATTTTGTACAATTAGGTTGGTT AAAGTGGATTGAAGTATGCTATGAATCATAATTATTTTCTGAAAAATCTTGGATATGTCCCTAAGTTTTCTGAAGTTCAA GTCACTTAAGAGTTAAGTATGTGTTTGGTGAGTTTGCTAAATGTGGTTTTGAATGGATTGAATTTTTTGTAGAATTAATT TGGTCCAGCTTGATTTAAAGTAAAATGATTTTAATTTGGATTTTATCTGCACAAAAGCTAGATAAAGCTACTTCTACCAA ACATAGTTTAGTTTGATACTGCAAATTCACAACCAAGCATGTGATAAACCATCAATAACATCCATAACCTTTGTTCCTGT CTGAGTACAATTTCTTAAAACATGTCTGGAAATGATTTTTCACTCTCTGTAATTTGCTGCAAAAAGAATGGTTCATATGA CAAATTAACATGATCCCTTTGATGCAATATTTGTAGTATGAGTTTTTTATAAATGTTCTGTTACAGATAATTTTATTTTC TCCCCTTTGTAGAAGTTAGAGACTTAGAGCTTTTTTGAGCCCATTGGTTTACTCTCAGAAAGTATGAAAATGAGTAAATA ACGCATTCATTCCTAACACTTATAGTTGAAGTTGCAGGTTGTTACTTCAACAAGAAAGACATTGAAATGTGTTATTTTTC TGTTTTCATACTTTTTAACCGTAAATAAAATAAACCCTATTTGTTTAATTGCTTGATATGTACTTAATCTCTGGCATTAA CAGGGTATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGA GATAAAACCAGCTCACTTTGAAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGG TGTTTGCTCAGACCTTGCAACAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACA GCAACAGCCTCTGATCCTTTCTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA
CDS sequence (LotjaGi1g1v0177300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTTGGTGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTT TGATGAACTTGACTCAATTGCAACCCAGCGAGGCAGTTCTGTAGGGGATGCTGGCGGTGCTGCAGATAGGGTGTTGAACC AACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCATCATCGGCGCAACAAACAGACCAGACATCATA GACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATTCCTTTACCGGATGAAAGTTCACGCCTTCAAAT CTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCTGGCTGCTCTGGCCCGTTACACTCAGGGATTTA GTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGGTATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCA GAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTGAAGAGTCAATGAAGTTTGC TCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAACAGTCTCGTGGAATCGGAA CGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTTCTCGTCTGTTACCGCAGAT GGAGAGGATGATCTCTACAGTTAA
Protein sequence (LotjaGi1g1v0177300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDII DPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGADITEICQRACKYGIEQERRKRENP EAMEEDETEEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQSRGIGTEFRFPDRNENTATATASDPFSSVTAD GEDDLYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 239 | 239 | 2.9E-139 | – | |
| PANTHER | 1 | 239 | 239 | 2.9E-139 | – | |
| Gene3D | 1 | 99 | 99 | 4.5E-36 | – | |
| Pfam | 2 | 98 | 97 | 1.4E-27 | ||
| SUPERFAMILY | 2 | 205 | 204 | 5.9E-42 | ||
| CDD | 9 | 98 | 90 | 1.80029E-13 | – | |
| ProSitePatterns | 68 | 86 | 19 | - | ||
| Gene3D | 100 | 207 | 108 | 6.5E-36 | – | |
| Pfam | 120 | 153 | 34 | 1.8E-10 | ||
| MobiDBLite | 213 | 247 | 35 | - | – | |
| MobiDBLite | 220 | 236 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0177300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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