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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0292700 |
Transcript ID | LotjaGi1g1v0292700.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cytochrome b5; TAIR: AT5G53560.1 cytochrome B5 isoform E; Swiss-Prot: sp|P40934|CYB5_BRAOB Cytochrome b5; TrEMBL-Plants: tr|I3STG7|I3STG7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71026250..71028931) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATCATCATACATCACCTACCACCTTCACCACAAAAAGAGAGATAGAGAGATTTGGCACAACACAAACAACACTGTC ACTCAAGAAGAATCTGGTGTCTCTTTGGTATGTGTTGTTGACTCTCAATCAATCAAATCATCCTCTTCCCATTCCCTTCT TCACTTCCTAACCATTAGAATTGACAAGAAAAATCAAATTTTTACTCTTCTCGTTGATTCAATTTTGGATTATTGGTGGT TGTTTCGTTTTTTAGATGCTCTTTTCGTTGATTTTACATGAAAAAAATTGTGGGTTTGACTTGAATTTTTGTGGGTGTTT TTTGTGTGGTAGTGGAAGTGAAAATGGCGTCAGATCCGAAAGTTCATCTTTTTGAAGATGTGGTGAAGCACAGCGAGATC AAAGATTGTTGGCTTATCATTGATGGGAAGGTCAGTTTTTTCTGATTTTTTTTTTTTAATTTTCCGTGAATTATTGATTC ACTTGATCATGGCTTTTTGCATATGGTTTTTGGTGTTTGAATGCTTCATTTGATCTTGTTTTGATTGTGAATTTTGATGT TCTGGAAGTGATGCATGCCTTGTTTTTTCCTGGTTCATTTGCTGATGAAGTTTGATTTAGTCTTTTTTTCCACTCAATTC GCCCTTTTGCATTTGTATGTTAGCAGGGTATTTATTCCTTATTGCAACAGCATCTTTAGAGAAGTTGTTTTGTCTTGCTT TGTTGGACTCAAGTTTGCTCTTGAAATAATCTGCTACTTTAGTCTTATTTTTAATGGTCAATGTTATTTGTATTTTATTT ATGCCACCATCTCTGGATTGTATGCATAACATGTAACAAGTCAAGGTTCCTGTTCTCCTGTACTAAATAATATATTTTCC AAGGGCTGCTACATGTAGTTCTACATCAGCCTGAGTAAAAGGACTTCGGAAGAAATTGTTAAAAATGATCTTATTATTAA TAATATTCTCCATAATATGGTTTCGTAATATGGTTTTTGATCGAGCTCAATGGTGTAGTGTTGATCCATATAGCCGACTT CACTTAGTGGGATAAGGCTTTTGTTGTTGTTGTTTATATCAATGTTAAGACTTTATATGAACTATAGAATAGAATCGTAG CCTACATAACGTGCCTTACCGATCTTAACCTTAGAATCTCATCGTAGAATATTGAATTCCAATCTGATTGACTCTAAAGT TGCTGGATGACCAAGCACAAACATAAAATTTATGGTCATATGGTACATAGTATCCTTACCCTAATTGTTCTACATTTAAG TGTGTTTGGATTTCTCTTGGACTCAACGTCGATCGACGTCGACATTGAAGTCTCAACGTGGTAAAAATCTTGCTTCTCTG ATTGTGCATTGTGATGTGTGTTACGCAAACAGGAAATCAATCACACACTAAGAAAATTCATATCTGCAAATTCTCCTGAT GCTTTGTTTGTGTAAATTTTCTGTTTGTTAGTCTATGTCTTATACTTTCTTAGAAGCTGCTAATCCTTGATCTGCATTAC TAGTTGGGTTGCAGCTTTAATCTGTACTATATTAATTGTCATTTAAAATGTGATTATATTGATTCCATACCTTTGGTACT GGAAAATGTCAAACACCCTGAAGAGTGCAGAACCCCATGTATACTGGCATGAACTTCAGTTCTAGCACGTCATGATTTTA ATTTCTTCCACATAACAAACTTACGTCCTTCAACCATATTAGGTGTATGATGTCACCCCTTTTATGGAGGATCATCCCGG AGGTGATGAAGTTTTGTTATCAGCAACAGGTATGCTTATATCATCAGATGAGTATTTATAATAAAACCACCAAAGGATAA CAATATTGATTATACTCTACTCTATGGATTACAGGGAAAGATGCAACTAATGATTTTGAAGATGTTGGACACAGTGATTC TGCTAGAGACATGATGGAAAAATACTACATTGGTGAGATTGATCCATCAACTGTCCCATTAAAGCGGACCTACGTTCCTC CTCCGCACACTCAGTACAATCCCGACAAGACCTCTGAATTCGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATA TTGGGCTTAGCCTTTGCTGTCCGACACTACACCAAGAAAGAAGAGTAGTTCCTTCTTCATCGCATTGGACCCTATCAAAG GGGTCTGTTTGCTATTTATACAGGGTCATTTAATGGACAGTGTTTTGGTTAGTTACTTTCTGGTGTCTGAGCATTAAAAC TGGATTCTAGACTTTAGTTCAGTGAGTCAATGTTTTCCAACTTTCTTTGGCAATGGTACTAGTGTCTTTATGACTTACAG AACCTAATAATGTTGGATGGCACTTCCTTTCTTTTTATTTTGCACTATTGCTTCATTAAGATTTTCTTTTTTCTTCTTAG CTGCTAAGGTAGCTAAGCTACTCATTATTATTCATCAATGGTGTGGAACATAATCTGCTTAAAACATGGTGGATTGTGAG AAAAAATAAATAGAACTTGTTTCAGTTTGGAACTTTAGTACTATATGGATGTTTCTTGGTTCAGGTAACTTGTGCATTGA TTTATGTCGATCTCCTTCTCCAAGGTCAAGGATAAACGCGCTCTAACAGTTTACAATTATGTTCAAAAGGAGGAAAATAA TAATAAAATGAAAAAGCCATCATACCTTGGAAATACCACATA
CDS sequence (LotjaGi1g1v0292700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAGATCCGAAAGTTCATCTTTTTGAAGATGTGGTGAAGCACAGCGAGATCAAAGATTGTTGGCTTATCATTGA TGGGAAGGTGTATGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAAGTTTTGTTATCAGCAACAGGGAAAG ATGCAACTAATGATTTTGAAGATGTTGGACACAGTGATTCTGCTAGAGACATGATGGAAAAATACTACATTGGTGAGATT GATCCATCAACTGTCCCATTAAAGCGGACCTACGTTCCTCCTCCGCACACTCAGTACAATCCCGACAAGACCTCTGAATT CGTGATCAAGATTTTGCAGTTCCTGGTCCCTCTCCTGATATTGGGCTTAGCCTTTGCTGTCCGACACTACACCAAGAAAG AAGAGTAG
Protein sequence (LotjaGi1g1v0292700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSARDMMEKYYIGEI DPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLILGLAFAVRHYTKKEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 106 | 106 | - | – | |
PANTHER | 2 | 133 | 132 | 4.9E-64 | – | |
PANTHER | 2 | 133 | 132 | 4.9E-64 | – | |
Gene3D | 2 | 87 | 86 | 7.5E-33 | ||
SUPERFAMILY | 4 | 93 | 90 | 3.4E-32 | ||
ProSiteProfiles | 5 | 81 | 77 | 28.276 | ||
SMART | 8 | 81 | 74 | 2.1E-27 | ||
Pfam | 11 | 80 | 70 | 3.5E-25 | ||
PRINTS | 30 | 40 | 11 | 4.7E-16 | ||
ProSitePatterns | 36 | 43 | 8 | - | ||
PRINTS | 40 | 54 | 15 | 4.7E-16 | ||
PRINTS | 55 | 62 | 8 | 4.7E-16 | ||
PRINTS | 68 | 80 | 13 | 4.7E-16 | ||
TMHMM | 105 | 127 | 23 | - | – | |
Phobius | 107 | 127 | 21 | - | – | |
Phobius | 128 | 135 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi1g1v0292700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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