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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001199
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 47 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.492s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0006719.1
n.a. RecName: Full=Nitrate reductase [NADH] gi|730146|sp|P39869.1|NIA_LOTJA chr0 2583624 2588430 -
7 domain predictions
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Lj0g3v0013289.1
n.a. PREDICTED: fatty acid desaturase 3-like [Glycine max] gi|356526912|ref|XP_003532059.1| chr0 5019519 5021462 -
6 domain predictions
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Lj0g3v0067269.1
n.a. PREDICTED: cytochrome b5 reductase 4-like [Glycine max] gi|356531661|ref|XP_003534395.1| chr0 23841287 23843890 -
5 domain predictions
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Lj0g3v0092329.1
n.a. PREDICTED: probable steroid-binding protein 3-like [Glycine max] gi|356514883|ref|XP_003526131.1| chr0 38405435 38406388 +
5 domain predictions
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Lj0g3v0112719.1
n.a. Delta-6-desaturase [Medicago truncatula] gi|357437417|ref|XP_003588984.1| chr0 49182724 49184756 +
6 domain predictions
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Lj0g3v0122309.1
n.a. PREDICTED: neuferricin-like [Cicer arietinum] gi|502134328|ref|XP_004502079.1| chr0 54663867 54670837 -
5 domain predictions
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Lj0g3v0357469.1
n.a. PREDICTED: fatty acid desaturase 3-like [Glycine max] gi|356526912|ref|XP_003532059.1| chr0 188213305 188215304 +
6 domain predictions
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Lj1g3v1720110.1
n.a. PREDICTED: cytochrome b5-like [Glycine max] gi|356510537|ref|XP_003523994.1| chr1 20224030 20224854 +
7 domain predictions
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Lj2g3v0286840.1
n.a. PREDICTED: membrane steroid-binding protein 2-like [Cicer arietinum] gi|502175275|ref|XP_004515701.1| chr2 4812671 4815774 -
5 domain predictions
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Lj2g3v0793710.1
n.a. cytochrome b5 [Malus domestica] gi|219547603|gb|ABR04092.2| chr2 12547449 12549793 -
7 domain predictions
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Lj2g3v0855200.1
n.a. PREDICTED: cytochrome b5-like [Cicer arietinum] gi|502164084|ref|XP_004513043.1| chr2 13139498 13143335 -
7 domain predictions
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Lj2g3v1242210.1
n.a. PREDICTED: cytochrome b5-like [Cicer arietinum] gi|502094435|ref|XP_004490217.1| chr2 19681918 19684196 +
7 domain predictions
 –
Lj3g3v2480930.1
n.a. Cytochrome b5 [Medicago truncatula] gi|357514461|ref|XP_003627519.1| chr3 30552364 30555863 +
7 domain predictions
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Lj3g3v2986090.1
n.a. Fatty acid/sphingolipid desaturase [Theobroma cacao] gi|508703935|gb|EOX95831.1| chr3 36960556 36962204 +
6 domain predictions
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Lj3g3v3688850.1
n.a. PREDICTED: cytochrome b5 reductase 4-like [Glycine max] gi|356542758|ref|XP_003539832.1| chr3 44749798 44751306 -
7 domain predictions
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Lj3g3v3688850.2
n.a. PREDICTED: cytochrome b5 reductase 4-like [Glycine max] gi|356531661|ref|XP_003534395.1| chr3 44749798 44752997 -
7 domain predictions
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Lj5g3v2013950.1
n.a. PREDICTED: membrane steroid-binding protein 1-like [Cicer arietinum] gi|502119335|ref|XP_004496583.1| chr5 28426173 28429387 +
5 domain predictions
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Lj5g3v2013960.1
n.a. PREDICTED: membrane steroid-binding protein 1-like [Cicer arietinum] gi|502119335|ref|XP_004496583.1| chr5 28426173 28430064 +
3 domain predictions
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LotjaGi1g1v0152000.1
n.a. Nitrate reductase; TAIR: AT1G77760.1 nitrate reductase 1; Swiss-Prot: sp|P39869|NIA_LOTJA Nitrate reductase [NADH]; TrEMBL-Plants: tr|E7ELN7|E7ELN7_MEDTR Nitrate reductase; Found in the gene: LotjaGi1g1v0152000 LjG1.1_chr1 26164087 26169107 +
5 domain predictions
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LotjaGi1g1v0292700.1
n.a. Cytochrome b5; TAIR: AT5G53560.1 cytochrome B5 isoform E; Swiss-Prot: sp|P40934|CYB5_BRAOB Cytochrome b5; TrEMBL-Plants: tr|I3STG7|I3STG7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0292700 LjG1.1_chr1 71026250 71028931 +
5 domain predictions
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LotjaGi1g1v0292700.2
n.a. Cytochrome b5; TAIR: AT5G53560.1 cytochrome B5 isoform E; Swiss-Prot: sp|P40934|CYB5_BRAOB Cytochrome b5; TrEMBL-Plants: tr|J7FWS2|J7FWS2_ROSRU Yellow stripe-like protein; Found in the gene: LotjaGi1g1v0292700 LjG1.1_chr1 71027671 71028377 +
4 domain predictions
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LotjaGi1g1v0292700.3
n.a. Cytochrome b5; TAIR: AT5G53560.1 cytochrome B5 isoform E; Swiss-Prot: sp|P40934|CYB5_BRAOB Cytochrome b5; TrEMBL-Plants: tr|J7FWS2|J7FWS2_ROSRU Yellow stripe-like protein; Found in the gene: LotjaGi1g1v0292700 LjG1.1_chr1 71027710 71028377 +
4 domain predictions
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LotjaGi1g1v0360400.1
n.a. Cytochrome b5; TAIR: AT5G48810.1 cytochrome B5 isoform D; Swiss-Prot: sp|Q9ZWT2|CYB5D_ARATH Cytochrome B5 isoform D; TrEMBL-Plants: tr|I3S6M8|I3S6M8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0360400 LjG1.1_chr1 83534865 83539297 +
5 domain predictions
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LotjaGi1g1v0375900.1
n.a. Membrane steroid-binding protein; TAIR: AT2G24940.1 membrane-associated progesterone binding protein 2; Swiss-Prot: sp|Q9SK39|SBP3_ARATH Probable steroid-binding protein 3; TrEMBL-Plants: tr|I3S9M2|I3S9M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0375900 LjG1.1_chr1 85442722 85444363 +
3 domain predictions
 –
LotjaGi1g1v0795400.1
n.a. Cytochrome b5; TAIR: AT5G48810.1 cytochrome B5 isoform D; Swiss-Prot: sp|P49098|CYB5_TOBAC Cytochrome b5; TrEMBL-Plants: tr|C6TFJ7|C6TFJ7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0795400 LjG1.1_chr1 136622065 136624362 +
5 domain predictions
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LotjaGi2g1v0115700.1
n.a. Membrane steroid-binding protein; TAIR: AT3G48890.1 membrane-associated progesterone binding protein 3; Swiss-Prot: sp|Q9M2Z4|MSBP2_ARATH Membrane steroid-binding protein 2; TrEMBL-Plants: tr|A0A0B2SJ61|A0A0B2SJ61_GLYSO Membrane steroid-binding protein 2; Found in the gene: LotjaGi2g1v0115700 LjG1.1_chr2 42757178 42767204 +
3 domain predictions
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LotjaGi2g1v0144700.1
n.a. Membrane steroid-binding protein; TAIR: AT5G52240.1 membrane steroid binding protein 1; Swiss-Prot: sp|Q9XFM6|MSBP1_ARATH Membrane steroid-binding protein 1; TrEMBL-Plants: tr|I3S3C3|I3S3C3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0144700 LjG1.1_chr2 52412472 52416941 +
3 domain predictions
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LotjaGi2g1v0224600.1
n.a. Cytochrome b5; TAIR: AT1G60660.1 cytochrome B5-like protein; Swiss-Prot: sp|O22704|CYP5F_ARATH Cytochrome B5-like protein; TrEMBL-Plants: tr|I3SP54|I3SP54_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0224600 LjG1.1_chr2 68079116 68090796 +
5 domain predictions
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LotjaGi2g1v0292600.1
n.a. Cytochrome b5; TAIR: AT1G26340.1 cytochrome B5 isoform A; Swiss-Prot: sp|Q9FDW8|CYB5A_ARATH Cytochrome b5 isoform A; TrEMBL-Plants: tr|I3RZP2|I3RZP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0292600 LjG1.1_chr2 76715966 76718717 +
5 domain predictions
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LotjaGi2g1v0305100.1
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A061DUT1|A0A061DUT1_THECC Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi2g1v0305100 LjG1.1_chr2 77846146 77847937 -
4 domain predictions
 –
LotjaGi3g1v0081700.1
n.a. Cytochrome b5; TAIR: AT2G32720.1 cytochrome B5 isoform B; Swiss-Prot: sp|P49098|CYB5_TOBAC Cytochrome b5; TrEMBL-Plants: tr|I3SU64|I3SU64_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0081700 LjG1.1_chr3 9148182 9150411 -
5 domain predictions
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LotjaGi3g1v0400000.1
n.a. Cytochrome b5; TAIR: AT5G53560.1 cytochrome B5 isoform E; Swiss-Prot: sp|Q42342|CYB5E_ARATH Cytochrome b5 isoform E; TrEMBL-Plants: tr|I3S2U9|I3S2U9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0400000 LjG1.1_chr3 80183688 80187821 +
5 domain predictions
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LotjaGi3g1v0548900.1
n.a. Cytochrome b5; TAIR: AT5G09680.1 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0548900 LjG1.1_chr3 96543413 96547170 +
5 domain predictions
 –
LotjaGi3g1v0549100.1
n.a. Cytochrome b5; TAIR: AT5G09680.3 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0549100 LjG1.1_chr3 96596007 96599863 +
3 domain predictions
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LotjaGi3g1v0549100.2
n.a. Cytochrome b5; TAIR: AT5G09680.1 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0549100 LjG1.1_chr3 96596007 96599863 +
5 domain predictions
 –
LotjaGi3g1v0549100.3
n.a. Cytochrome b5; TAIR: AT5G09680.3 reduced lateral root formation; Swiss-Prot: sp|Q9LXD1|RLF_ARATH Cytochrome b5 domain-containing protein RLF; TrEMBL-Plants: tr|I3S1V2|I3S1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0549100 LjG1.1_chr3 96596106 96599454 +
3 domain predictions
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LotjaGi4g1v0176100.1
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 LjG1.1_chr4 35685456 35687963 -
4 domain predictions
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LotjaGi4g1v0176100.2
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 LjG1.1_chr4 35686027 35687594 -
4 domain predictions
 –
LotjaGi4g1v0176100.3
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 LjG1.1_chr4 35686027 35687640 -
4 domain predictions
 –
LotjaGi4g1v0184800.1
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 LjG1.1_chr4 40166035 40168159 +
4 domain predictions
 –
LotjaGi4g1v0184800.2
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 LjG1.1_chr4 40166039 40172815 +
4 domain predictions
 –
LotjaGi4g1v0184800.3
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 LjG1.1_chr4 40166285 40167896 +
4 domain predictions
 –
LotjaGi4g1v0184800.4
n.a. Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 LjG1.1_chr4 40166430 40167896 +
4 domain predictions
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LotjaGi5g1v0043300.1
n.a. Desaturase; TAIR: AT3G61580.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|O04353|DES6_BOROF Acyl-lipid (9-3)-desaturase; TrEMBL-Plants: tr|G7I9X4|G7I9X4_MEDTR Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi5g1v0043300 LjG1.1_chr5 7285712 7289319 +
4 domain predictions
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LotjaGi5g1v0043300.2
n.a. Desaturase; TAIR: AT3G61580.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|O04353|DES6_BOROF Acyl-lipid (9-3)-desaturase; TrEMBL-Plants: tr|G7I9X4|G7I9X4_MEDTR Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi5g1v0043300 LjG1.1_chr5 7285881 7287239 +
4 domain predictions
 –
LotjaGi5g1v0302100.1
n.a. Membrane steroid-binding protein; TAIR: AT5G52240.1 membrane steroid binding protein 1; Swiss-Prot: sp|Q9XFM6|MSBP1_ARATH Membrane steroid-binding protein 1; TrEMBL-Plants: tr|T2DNN1|T2DNN1_PHAVU Steroid binding protein; Found in the gene: LotjaGi5g1v0302100 LjG1.1_chr5 61900773 61905042 +
3 domain predictions
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LotjaGi6g1v0029700.1
n.a. Membrane steroid-binding protein; TAIR: AT4G14965.1 membrane-associated progesterone binding protein 4; Swiss-Prot: sp|Q2HIW2|MAPR4_ARATH Membrane-associated progesterone-binding protein 4; TrEMBL-Plants: tr|I3S423|I3S423_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0029700 LjG1.1_chr6 5216047 5223210 -
3 domain predictions
 –