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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0307100 |
Transcript ID | LotjaGi1g1v0307100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chalcone-flavonone isomerase family protein; TAIR: AT5G05270.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8VZW3|CFI3_ARATH Probable chalcone--flavonone isomerase 3; TrEMBL-Plants: tr|I3STD3|I3STD3_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi1g1v0307100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74817333..74820984) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGTATATATTCAAAAACTGAAAATTAAAGAGATTCATTAGTTTTGGTAAAAGAGGACACGTTTTATGTGATGTGTA GTTTAGGTCCATAGTTTAGGTTGTGGCCAAATAATGAACTACAAATTATGTAGAACCATAATTTTATGGTGGATCATGTT AAAAGATGATTAACTTTTCGAATCATGTTTTTACAAATAACATCAGTATTATATCTTTCTGATGTTGCCAAAATTAATCT GTGAAAAACTGTTGTAACTTGTGAATCATATTTTTCTTGGTAAACCGAGTTAAACCGCAATGGAAAGGTAGCAATTAATA AACTCACAGGTGTGTCAACTTGCTCTACCTACCACCTTGAGAGCAGCCTAGTCTGGTAGAAAGTGTCTAAAACATAGAGC TTTATATAGCAACTCAACGAGTCATACATACACCTCACCCTTCACCTGTGTCTAAATTCCTCTAAATCTTTGCTCAATCA ATTCTTCAACCCTGTCTCTATTTCCATCTCCTGCAAACACAACTAGTAAGAGCTCTCTTTCTCTGTTATATGAGTTGCTA ATCTCTTGTTTAGTTGTTTTGGGTGCCTATAATTGAGACAATTTTTTTTTTGTGAATTTAATTTCAGTGGCCAGTGAAAC AGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGGTTATGGTAAGCTGC ATGTATCCCTTTTCTTGATTTGATTCTGAAGATGGGGGGTGATGTCTAGAATTTTTAATGTTCCTGTAAACTAATGTTTC AACTTTCTACTTTGAATCCAAGTTCAGAATTGAAGTTTTAAACTAAATTCAGCTTGGGATTTAGATCATAGGCTCTAGAT TTTAAAACTGCTGGATTATTTGCTTTGGCTTGATTTATGTGTAAGTTGCAACTAGAAACAACTTGATCTAATTCCTTCTT TGATCAGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGT AGTAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTT CTGGTAAGTTGTGATCCTTAATAATCCAAGTTCTGTTAATATCTTAGCAGGGTATGGCTATTGGTGAAGCTTTGATATTG TTAGAAATATAATAGAAAAAACCATTCATGTATTTTCACTCAAGCTTAGCATAAGCTTTTGGGATAGTTGGTTCATGACA TGGTATTAGAGCCTCTCTGACAAAGTAGTCTAAAGTTCAATTCTTGTTGCCCCATTATTCTGCTAAAAAAAGTTAAATTT TCCGACAAGGTATGCGAGGCTGTGCAATGTCTCTTGCGTAAGGGGGCACGTTACAAATATGATATAAGATCATTTATATG TCTTCACCAAATACTTATAGCTTAAGCTTTTGGAATAGTTGGTTGATGAAAATATGAGCCCATCTATTGATTAGTTTGTT GGTATCAATGGAAAAATAATGATATATTGCTAAATGCTAAATAGAACGAGTGCATGATACATTGTGTGTATGTGCAGCTC CGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGCTGTG AGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCCAGTC TAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGGTAAAGTATATGTAGC AGCTTCATCTACCTCGTTTGATCCTTCATTGCTGATTAAGTGTGTGTTTGGCTCCACGTTGGAGAGTCTTAAAATCAATT CTCATTCACCAGAATCACTTTTAGGTGGATATATAAATGTTTGAAAATCGGCGTAGAGAATTGATTTTAGTTTTTAAATT AACTCTGCGGAGAATTTAGAGATAGTAACTTTTGCGGTTGACATAATCGATTGTCGGATTTCATAACTGGATTTCACAAC ATTACCCTATAAGAAATCACTTTACCCATCAATTTATCCATACATAAATCACTTCACTTTCAACTCACTTTTACCATAAT CAATTTTACTAAAGTCAATTCTATCCCAAATCAATTCTGACAACGTTAATCCAAACACGTTGTAAGTGCATGTTTGAATC CTTCTACAATACAATTGATTCTAAACCTTTTAGGGAGAAGCTTCTGTGACTACCTTCTGATTGATTCTGAGGAAGGAATT TGATCCAAACATGCTATTAAAGTTGAGTTAGCTTTAGATGATCAAAACTGATTCTTGTTTATTGTGTTTTCTGTACAGAT TGTTGTGTCTTTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGT ACCTTGGTGGATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA AGAGAACCTCATGCTGTATAATCTTTGAGGGATCTGTGTTGTGTTTGTAATATTTTCGGATTTCGGCTTTTTAACTTTTC AGAATAATGTTGTTGTTTACATGTCAAATTCTTGAGTGCTAATGGTTATTCTTCAAATAAGTTAGAACTCAGCGCATAAA TTTAAGGCTTAAATATATTTTTAGTCTCTGACTTTTAAGGAGAAATTAAATTGAATTCCTGTAAAAAATCATTTACAATA AATCATTTACAATAGAGTTATTTTTTTAATCTAAATAGGTCCAAACGCTAAATTTGTGACTTCACCTCATCAATTCGCAC TAGTCAACACTTCCGTAAGCCGGATCCTCTGGACTTAGACCATAAGGTTATTATTATTAAACACTTGTAGGCATAGAAGC TATAAATTAAGTTCATTAAAAAGCTTTTTATGTTTTGAACTGGTTTTGAAGAAACTCAAATTTGAAGCTGCCCCTTTGAA TAGATATTCAGTTCACTTTAATCAATAAACACTCTCCTCAGATGCTAACAATTTGTCTTGGTGCTAAAATTATGAAAAGC TTCCAAATTTGCTAGTTGATTATCAGAGCAACTCCAACGCTCAACTCCAACGCTGGTTTCTTAACCAGGTTGGAGGTGCT AAGAAACCAAGGGCCAGTTTCTTACCCATTGGAGCAGGGTTCCATCCGGTTTCTTAGCTAAGAAAAAGTGGGCAGAGTTG CTTGCAGAAGCAACTCTGCTTTATCAGTTTCTTAAATAAAATACTATACTTTCTCTCACATTCAGTTCCAACAGATTACA GAGGGAAGAAACAGGGTTAACAGATTGTATGAACTACTACAATTTTATTCAAACAATAATTACAAAGCTTCAGAAAAATA AATTTTTACAAAGAAAAATGGAAAAAAAAAATTACAGAAGCTGAAGGGTGTAAGGAAAAAAATTACAGAAAAAAATTACA ATAAATTTTTGTTTGATCCGGTTGTTTTTCTCTGATCTGGTGGCGGTGGCAGAGGGTGGCCCTTGAGGAAGGCTTGCATG TCTCTGATCCAGTGCTTGAGGGGCGATTTGGGTCGAGATTGAAGCTTTGGTG
CDS sequence (LotjaGi1g1v0307100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGTGAAACAGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGG TTATGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGTAG TAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTTCT GCTCCGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGC TGTGAGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCC AGTCTAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGATTGTTGTGTCT TTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGTACCTTGGTGG ATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA
Protein sequence (LotjaGi1g1v0307100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASETVLVDEITYPSKITTTKPLSLLGYGLNDMVIHFLQVKFYTIGVYLDPEVVGHLQQWKGTPAKELEEKDDFFDALIS APVEKAIRLVVMKEIKGAQYGVQIETAVRDRLVNDDKYEDEEEAALEQVVEFFQSKYFKKNSVITFHFPANSPTAEIVVS LEGKEDTKFVVENANVVETIKKWYLGGSGAISPSTISSLASNLSEELSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 209 | 209 | 1.8E-104 | – | |
SUPERFAMILY | 5 | 208 | 204 | 2.62E-49 | ||
Pfam | 8 | 205 | 198 | 4.4E-27 | ||
Gene3D | 20 | 184 | 165 | 1.0E-70 | ||
Gene3D | 53 | 205 | 153 | 1.0E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Intramolecular lyase activity | The catalysis of certain rearrangements of a molecule to break or form a ring. |
Expression pattern of LotjaGi1g1v0307100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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