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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0307100 |
Transcript ID | LotjaGi1g1v0307100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chalcone-flavonone isomerase family protein; TAIR: AT5G05270.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8VZW3|CFI3_ARATH Probable chalcone--flavonone isomerase 3; TrEMBL-Plants: tr|I3STD3|I3STD3_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi1g1v0307100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74817959..74819892) extracted from Lotus japonicus Gifu genome v1.2.
GTGGCCAGTGAAACAGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGG TTATGGTAAGCTGCATGTATCCCTTTTCTTGATTTGATTCTGAAGATGGGGGGTGATGTCTAGAATTTTTAATGTTCCTG TAAACTAATGTTTCAACTTTCTACTTTGAATCCAAGTTCAGAATTGAAGTTTTAAACTAAATTCAGCTTGGGATTTAGAT CATAGGCTCTAGATTTTAAAACTGCTGGATTATTTGCTTTGGCTTGATTTATGTGTAAGTTGCAACTAGAAACAACTTGA TCTAATTCCTTCTTTGATCAGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTAT TTGGACCCTGAAGTAGTAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTT TGATGCTCTCATTTCTGGTAAGTTGTGATCCTTAATAATCCAAGTTCTGTTAATATCTTAGCAGGGTATGGCTATTGGTG AAGCTTTGATATTGTTAGAAATATAATAGAAAAAACCATTCATGTATTTTCACTCAAGCTTAGCATAAGCTTTTGGGATA GTTGGTTCATGACATGGTATTAGAGCCTCTCTGACAAAGTAGTCTAAAGTTCAATTCTTGTTGCCCCATTATTCTGCTAA AAAAAGTTAAATTTTCCGACAAGGTATGCGAGGCTGTGCAATGTCTCTTGCGTAAGGGGGCACGTTACAAATATGATATA AGATCATTTATATGTCTTCACCAAATACTTATAGCTTAAGCTTTTGGAATAGTTGGTTGATGAAAATATGAGCCCATCTA TTGATTAGTTTGTTGGTATCAATGGAAAAATAATGATATATTGCTAAATGCTAAATAGAACGAGTGCATGATACATTGTG TGTATGTGCAGCTCCGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGA TTGAGACTGCTGTGAGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTT GAGTTTTTCCAGTCTAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGGT AAAGTATATGTAGCAGCTTCATCTACCTCGTTTGATCCTTCATTGCTGATTAAGTGTGTGTTTGGCTCCACGTTGGAGAG TCTTAAAATCAATTCTCATTCACCAGAATCACTTTTAGGTGGATATATAAATGTTTGAAAATCGGCGTAGAGAATTGATT TTAGTTTTTAAATTAACTCTGCGGAGAATTTAGAGATAGTAACTTTTGCGGTTGACATAATCGATTGTCGGATTTCATAA CTGGATTTCACAACATTACCCTATAAGAAATCACTTTACCCATCAATTTATCCATACATAAATCACTTCACTTTCAACTC ACTTTTACCATAATCAATTTTACTAAAGTCAATTCTATCCCAAATCAATTCTGACAACGTTAATCCAAACACGTTGTAAG TGCATGTTTGAATCCTTCTACAATACAATTGATTCTAAACCTTTTAGGGAGAAGCTTCTGTGACTACCTTCTGATTGATT CTGAGGAAGGAATTTGATCCAAACATGCTATTAAAGTTGAGTTAGCTTTAGATGATCAAAACTGATTCTTGTTTATTGTG TTTTCTGTACAGATTGTTGTGTCTTTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGAC CATCAAGAAATGGTACCTTGGTGGATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGG AGTTGTCCAAGTGA
CDS sequence (LotjaGi1g1v0307100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGTAGTAGGGCACTTGCAGCA GTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTTCTGCTCCGGTGGAGAAGG CTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGCTGTGAGGGACCGGTTG GTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCCAGTCTAAGTACTTCAA GAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGATTGTTGTGTCTTTGGAGGGAAAAGAAG ACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGTACCTTGGTGGATCAGGGGCGATTTCT CCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA
Protein sequence (LotjaGi1g1v0307100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIHFLQVKFYTIGVYLDPEVVGHLQQWKGTPAKELEEKDDFFDALISAPVEKAIRLVVMKEIKGAQYGVQIETAVRDRL VNDDKYEDEEEAALEQVVEFFQSKYFKKNSVITFHFPANSPTAEIVVSLEGKEDTKFVVENANVVETIKKWYLGGSGAIS PSTISSLASNLSEELSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 152 | 152 | 8.2E-65 | ||
PANTHER | 2 | 177 | 176 | 1.3E-90 | – | |
SUPERFAMILY | 2 | 176 | 175 | 1.31E-41 | ||
Pfam | 5 | 173 | 169 | 1.4E-24 | ||
Gene3D | 21 | 173 | 153 | 8.2E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Intramolecular lyase activity | The catalysis of certain rearrangements of a molecule to break or form a ring. |
Expression pattern of LotjaGi1g1v0307100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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