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LotjaGi1g1v0307100.1

Overview

Field Value
Gene ID LotjaGi1g1v0307100
Transcript ID LotjaGi1g1v0307100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Chalcone-flavonone isomerase family protein; TAIR: AT5G05270.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8VZW3|CFI3_ARATH Probable chalcone--flavonone isomerase 3; TrEMBL-Plants: tr|I3STD3|I3STD3_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi1g1v0307100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:74817333..74820984) extracted from Lotus japonicus Gifu genome v1.2.

AGAAAGTATATATTCAAAAACTGAAAATTAAAGAGATTCATTAGTTTTGGTAAAAGAGGACACGTTTTATGTGATGTGTA GTTTAGGTCCATAGTTTAGGTTGTGGCCAAATAATGAACTACAAATTATGTAGAACCATAATTTTATGGTGGATCATGTT AAAAGATGATTAACTTTTCGAATCATGTTTTTACAAATAACATCAGTATTATATCTTTCTGATGTTGCCAAAATTAATCT GTGAAAAACTGTTGTAACTTGTGAATCATATTTTTCTTGGTAAACCGAGTTAAACCGCAATGGAAAGGTAGCAATTAATA AACTCACAGGTGTGTCAACTTGCTCTACCTACCACCTTGAGAGCAGCCTAGTCTGGTAGAAAGTGTCTAAAACATAGAGC TTTATATAGCAACTCAACGAGTCATACATACACCTCACCCTTCACCTGTGTCTAAATTCCTCTAAATCTTTGCTCAATCA ATTCTTCAACCCTGTCTCTATTTCCATCTCCTGCAAACACAACTAGTAAGAGCTCTCTTTCTCTGTTATATGAGTTGCTA ATCTCTTGTTTAGTTGTTTTGGGTGCCTATAATTGAGACAATTTTTTTTTTGTGAATTTAATTTCAGTGGCCAGTGAAAC AGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGGTTATGGTAAGCTGC ATGTATCCCTTTTCTTGATTTGATTCTGAAGATGGGGGGTGATGTCTAGAATTTTTAATGTTCCTGTAAACTAATGTTTC AACTTTCTACTTTGAATCCAAGTTCAGAATTGAAGTTTTAAACTAAATTCAGCTTGGGATTTAGATCATAGGCTCTAGAT TTTAAAACTGCTGGATTATTTGCTTTGGCTTGATTTATGTGTAAGTTGCAACTAGAAACAACTTGATCTAATTCCTTCTT TGATCAGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGT AGTAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTT CTGGTAAGTTGTGATCCTTAATAATCCAAGTTCTGTTAATATCTTAGCAGGGTATGGCTATTGGTGAAGCTTTGATATTG TTAGAAATATAATAGAAAAAACCATTCATGTATTTTCACTCAAGCTTAGCATAAGCTTTTGGGATAGTTGGTTCATGACA TGGTATTAGAGCCTCTCTGACAAAGTAGTCTAAAGTTCAATTCTTGTTGCCCCATTATTCTGCTAAAAAAAGTTAAATTT TCCGACAAGGTATGCGAGGCTGTGCAATGTCTCTTGCGTAAGGGGGCACGTTACAAATATGATATAAGATCATTTATATG TCTTCACCAAATACTTATAGCTTAAGCTTTTGGAATAGTTGGTTGATGAAAATATGAGCCCATCTATTGATTAGTTTGTT GGTATCAATGGAAAAATAATGATATATTGCTAAATGCTAAATAGAACGAGTGCATGATACATTGTGTGTATGTGCAGCTC CGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGCTGTG AGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCCAGTC TAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGGTAAAGTATATGTAGC AGCTTCATCTACCTCGTTTGATCCTTCATTGCTGATTAAGTGTGTGTTTGGCTCCACGTTGGAGAGTCTTAAAATCAATT CTCATTCACCAGAATCACTTTTAGGTGGATATATAAATGTTTGAAAATCGGCGTAGAGAATTGATTTTAGTTTTTAAATT AACTCTGCGGAGAATTTAGAGATAGTAACTTTTGCGGTTGACATAATCGATTGTCGGATTTCATAACTGGATTTCACAAC ATTACCCTATAAGAAATCACTTTACCCATCAATTTATCCATACATAAATCACTTCACTTTCAACTCACTTTTACCATAAT CAATTTTACTAAAGTCAATTCTATCCCAAATCAATTCTGACAACGTTAATCCAAACACGTTGTAAGTGCATGTTTGAATC CTTCTACAATACAATTGATTCTAAACCTTTTAGGGAGAAGCTTCTGTGACTACCTTCTGATTGATTCTGAGGAAGGAATT TGATCCAAACATGCTATTAAAGTTGAGTTAGCTTTAGATGATCAAAACTGATTCTTGTTTATTGTGTTTTCTGTACAGAT TGTTGTGTCTTTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGT ACCTTGGTGGATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA AGAGAACCTCATGCTGTATAATCTTTGAGGGATCTGTGTTGTGTTTGTAATATTTTCGGATTTCGGCTTTTTAACTTTTC AGAATAATGTTGTTGTTTACATGTCAAATTCTTGAGTGCTAATGGTTATTCTTCAAATAAGTTAGAACTCAGCGCATAAA TTTAAGGCTTAAATATATTTTTAGTCTCTGACTTTTAAGGAGAAATTAAATTGAATTCCTGTAAAAAATCATTTACAATA AATCATTTACAATAGAGTTATTTTTTTAATCTAAATAGGTCCAAACGCTAAATTTGTGACTTCACCTCATCAATTCGCAC TAGTCAACACTTCCGTAAGCCGGATCCTCTGGACTTAGACCATAAGGTTATTATTATTAAACACTTGTAGGCATAGAAGC TATAAATTAAGTTCATTAAAAAGCTTTTTATGTTTTGAACTGGTTTTGAAGAAACTCAAATTTGAAGCTGCCCCTTTGAA TAGATATTCAGTTCACTTTAATCAATAAACACTCTCCTCAGATGCTAACAATTTGTCTTGGTGCTAAAATTATGAAAAGC TTCCAAATTTGCTAGTTGATTATCAGAGCAACTCCAACGCTCAACTCCAACGCTGGTTTCTTAACCAGGTTGGAGGTGCT AAGAAACCAAGGGCCAGTTTCTTACCCATTGGAGCAGGGTTCCATCCGGTTTCTTAGCTAAGAAAAAGTGGGCAGAGTTG CTTGCAGAAGCAACTCTGCTTTATCAGTTTCTTAAATAAAATACTATACTTTCTCTCACATTCAGTTCCAACAGATTACA GAGGGAAGAAACAGGGTTAACAGATTGTATGAACTACTACAATTTTATTCAAACAATAATTACAAAGCTTCAGAAAAATA AATTTTTACAAAGAAAAATGGAAAAAAAAAATTACAGAAGCTGAAGGGTGTAAGGAAAAAAATTACAGAAAAAAATTACA ATAAATTTTTGTTTGATCCGGTTGTTTTTCTCTGATCTGGTGGCGGTGGCAGAGGGTGGCCCTTGAGGAAGGCTTGCATG TCTCTGATCCAGTGCTTGAGGGGCGATTTGGGTCGAGATTGAAGCTTTGGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0307100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAGTGAAACAGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGG TTATGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGTAG TAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTTCT GCTCCGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGC TGTGAGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCC AGTCTAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGATTGTTGTGTCT TTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGTACCTTGGTGG ATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0307100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASETVLVDEITYPSKITTTKPLSLLGYGLNDMVIHFLQVKFYTIGVYLDPEVVGHLQQWKGTPAKELEEKDDFFDALIS APVEKAIRLVVMKEIKGAQYGVQIETAVRDRLVNDDKYEDEEEAALEQVVEFFQSKYFKKNSVITFHFPANSPTAEIVVS LEGKEDTKFVVENANVVETIKKWYLGGSGAISPSTISSLASNLSEELSK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47588
1 209 209 1.8E-104 –
SUPERFAMILY
SSF54626
5 208 204 2.62E-49
IPR036298
Pfam
PF02431
8 205 198 4.4E-27
IPR016087
Gene3D
G3DSA:3.50.70.10
20 184 165 1.0E-70
IPR016088
Gene3D
G3DSA:1.10.890.20
53 205 153 1.0E-70
IPR016089

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016872
Molecular function Intramolecular lyase activity The catalysis of certain rearrangements of a molecule to break or form a ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0307100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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