Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0307100 |
| Transcript ID | LotjaGi1g1v0307100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chalcone-flavonone isomerase family protein; TAIR: AT5G05270.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8VZW3|CFI3_ARATH Probable chalcone--flavonone isomerase 3; TrEMBL-Plants: tr|I3STD3|I3STD3_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi1g1v0307100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74817959..74819892) extracted from Lotus japonicus Gifu genome v1.2.
GTGGCCAGTGAAACAGTTTTGGTTGATGAGATCACTTACCCTTCCAAGATCACCACCACCAAGCCCCTTTCTCTACTGGG TTATGGTAAGCTGCATGTATCCCTTTTCTTGATTTGATTCTGAAGATGGGGGGTGATGTCTAGAATTTTTAATGTTCCTG TAAACTAATGTTTCAACTTTCTACTTTGAATCCAAGTTCAGAATTGAAGTTTTAAACTAAATTCAGCTTGGGATTTAGAT CATAGGCTCTAGATTTTAAAACTGCTGGATTATTTGCTTTGGCTTGATTTATGTGTAAGTTGCAACTAGAAACAACTTGA TCTAATTCCTTCTTTGATCAGGCCTTAATGACATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTAT TTGGACCCTGAAGTAGTAGGGCACTTGCAGCAGTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTT TGATGCTCTCATTTCTGGTAAGTTGTGATCCTTAATAATCCAAGTTCTGTTAATATCTTAGCAGGGTATGGCTATTGGTG AAGCTTTGATATTGTTAGAAATATAATAGAAAAAACCATTCATGTATTTTCACTCAAGCTTAGCATAAGCTTTTGGGATA GTTGGTTCATGACATGGTATTAGAGCCTCTCTGACAAAGTAGTCTAAAGTTCAATTCTTGTTGCCCCATTATTCTGCTAA AAAAAGTTAAATTTTCCGACAAGGTATGCGAGGCTGTGCAATGTCTCTTGCGTAAGGGGGCACGTTACAAATATGATATA AGATCATTTATATGTCTTCACCAAATACTTATAGCTTAAGCTTTTGGAATAGTTGGTTGATGAAAATATGAGCCCATCTA TTGATTAGTTTGTTGGTATCAATGGAAAAATAATGATATATTGCTAAATGCTAAATAGAACGAGTGCATGATACATTGTG TGTATGTGCAGCTCCGGTGGAGAAGGCTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGA TTGAGACTGCTGTGAGGGACCGGTTGGTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTT GAGTTTTTCCAGTCTAAGTACTTCAAGAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGGT AAAGTATATGTAGCAGCTTCATCTACCTCGTTTGATCCTTCATTGCTGATTAAGTGTGTGTTTGGCTCCACGTTGGAGAG TCTTAAAATCAATTCTCATTCACCAGAATCACTTTTAGGTGGATATATAAATGTTTGAAAATCGGCGTAGAGAATTGATT TTAGTTTTTAAATTAACTCTGCGGAGAATTTAGAGATAGTAACTTTTGCGGTTGACATAATCGATTGTCGGATTTCATAA CTGGATTTCACAACATTACCCTATAAGAAATCACTTTACCCATCAATTTATCCATACATAAATCACTTCACTTTCAACTC ACTTTTACCATAATCAATTTTACTAAAGTCAATTCTATCCCAAATCAATTCTGACAACGTTAATCCAAACACGTTGTAAG TGCATGTTTGAATCCTTCTACAATACAATTGATTCTAAACCTTTTAGGGAGAAGCTTCTGTGACTACCTTCTGATTGATT CTGAGGAAGGAATTTGATCCAAACATGCTATTAAAGTTGAGTTAGCTTTAGATGATCAAAACTGATTCTTGTTTATTGTG TTTTCTGTACAGATTGTTGTGTCTTTGGAGGGAAAAGAAGACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGAC CATCAAGAAATGGTACCTTGGTGGATCAGGGGCGATTTCTCCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGG AGTTGTCCAAGTGA
CDS sequence (LotjaGi1g1v0307100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATCCACTTTCTCCAAGTGAAATTCTACACAATTGGGGTTTATTTGGACCCTGAAGTAGTAGGGCACTTGCAGCA GTGGAAAGGTACACCTGCAAAGGAGCTGGAAGAGAAAGATGACTTCTTTGATGCTCTCATTTCTGCTCCGGTGGAGAAGG CTATTAGACTTGTGGTGATGAAAGAGATCAAGGGCGCACAGTATGGAGTTCAGATTGAGACTGCTGTGAGGGACCGGTTG GTAAATGATGACAAATATGAGGATGAAGAAGAAGCTGCTTTGGAACAAGTTGTTGAGTTTTTCCAGTCTAAGTACTTCAA GAAAAATTCAGTAATCACATTTCATTTCCCAGCAAATTCTCCAACTGCTGAGATTGTTGTGTCTTTGGAGGGAAAAGAAG ACACCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGTACCTTGGTGGATCAGGGGCGATTTCT CCATCAACTATTTCATCTTTGGCTAGCAATCTGTCAGAGGAGTTGTCCAAGTGA
Protein sequence (LotjaGi1g1v0307100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIHFLQVKFYTIGVYLDPEVVGHLQQWKGTPAKELEEKDDFFDALISAPVEKAIRLVVMKEIKGAQYGVQIETAVRDRL VNDDKYEDEEEAALEQVVEFFQSKYFKKNSVITFHFPANSPTAEIVVSLEGKEDTKFVVENANVVETIKKWYLGGSGAIS PSTISSLASNLSEELSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 152 | 152 | 8.2E-65 | ||
| PANTHER | 2 | 177 | 176 | 1.3E-90 | – | |
| SUPERFAMILY | 2 | 176 | 175 | 1.31E-41 | ||
| Pfam | 5 | 173 | 169 | 1.4E-24 | ||
| Gene3D | 21 | 173 | 153 | 8.2E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Intramolecular lyase activity | The catalysis of certain rearrangements of a molecule to break or form a ring. |
Expression pattern of LotjaGi1g1v0307100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…